Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR49180 Gene

Subcategory (RNA class) for PIR49180 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR49180 Gene

No Aliases found

ORGUL Members for PIR49180 Gene

Previous GeneCards Identifiers for PIR49180 Gene

  • GC12P111264

No data available for External Ids for PIR49180 Gene

Summaries for PIR49180 Gene

GeneCards Summary for PIR49180 Gene

PIR49180 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49180 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49180 Gene

Genomics for PIR49180 Gene

GeneHancer (GH) Regulatory Elements for PIR49180 Gene

Promoters and enhancers for PIR49180 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I110826 Enhancer 1.2 Ensembl ENCODE 550.8 +0.1 95 0.8 PKNOX1 MLX ARID4B SIN3A ZNF2 IRF4 ZNF213 ARID2 ZNF207 ZNF143 PIR49180 IFT81 ENSG00000257268
GH12I110791 Enhancer 0.6 ENCODE 0.3 -35.1 -35084 0.2 SMARCA5 ZMYM3 IKZF1 TARDBP NBN ZFP36 ZBTB33 ZNF24 RUNX3 IKZF2 HVCN1 MYL2 GPN3 PIR49180 ENSG00000279925
GH12I110760 Enhancer 0.8 ENCODE 0.2 -66.5 -66545 0.2 HDAC1 PKNOX1 ZNF548 FOS ATF7 CEBPB ZEB2 ATF4 SMARCA4 CEBPA FAM109A ENSG00000279925 PIR49180
GH12I110776 Enhancer 0.7 ENCODE 0.2 -50.4 -50360 0.8 HDGF PKNOX1 BATF IRF4 RELA ZNF366 POLR2A NFATC1 ATF7 ETV6 FAM216A ENSG00000279925 PIR49180
GH12I110772 Enhancer 0.7 ENCODE 0.2 -53.8 -53832 1.3 TAL1 ZSCAN4 ZNF280A TCF12 NCOR1 ZSCAN5C CBFA2T2 TRIM24 ZNF280D RFX1 ARPC3 ENSG00000279925 PIR49180
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49180 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49180 Gene

Genomic Locations for PIR49180 Gene
chr12:110,826,876-110,826,904
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr12:111,264,680-111,264,708
(GRCh37/hg19)

Genomic View for PIR49180 Gene

Genes around PIR49180 on UCSC Golden Path with GeneCards custom track

PIR49180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49180 Gene

Proteins for PIR49180 Gene

Post-translational modifications for PIR49180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49180 Gene

Domains & Families for PIR49180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49180 Gene

Function for PIR49180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49180 Gene

Localization for PIR49180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49180 Gene

Pathways & Interactions for PIR49180 Gene

SuperPathways for PIR49180 Gene

No Data Available

Interacting Proteins for PIR49180 Gene

Gene Ontology (GO) - Biological Process for PIR49180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49180 Gene

Drugs & Compounds for PIR49180 Gene

No Compound Related Data Available

Transcripts for PIR49180 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49180 Gene

No ASD Table

Relevant External Links for PIR49180 Gene

GeneLoc Exon Structure for
PIR49180

No data available for mRNA/cDNA for PIR49180 Gene

Expression for PIR49180 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49180 Gene

Orthologs for PIR49180 Gene

No data available for Orthologs and Evolution for PIR49180 Gene

Paralogs for PIR49180 Gene

No data available for Paralogs for PIR49180 Gene

Variants for PIR49180 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49180 Gene

Disorders for PIR49180 Gene

No disorders were found for PIR49180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49180 Gene

Publications for PIR49180 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49180 Gene

Sources for PIR49180 Gene

Content
Loading form....