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Aliases for PIR49178 Gene

Subcategory (RNA class) for PIR49178 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR49178 Gene

No Aliases found

ORGUL Members for PIR49178 Gene

No data available for External Ids for PIR49178 Gene

Summaries for PIR49178 Gene

GeneCards Summary for PIR49178 Gene

PIR49178 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49178 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49178 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49178 Gene

Genomics for PIR49178 Gene

GeneHancer (GH) Regulatory Elements for PIR49178 Gene

Promoters and enhancers for PIR49178 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J087992 Enhancer 0.2 dbSUPER 650.7 0.0 -48 2.7 PIR49178 BANP CA5A KLHDC4 LOC400553
GH16J087947 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -41.1 -41139 10.5 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 BANP ZC3H18 GALNS ZCCHC14 ENSG00000269901 FBXO31 LOC400553 SLC7A5 PIR49178
GH16J087986 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.2 -7150 1.4 MEIS2 PKNOX1 FOXA2 FOXA3 CEBPB CBFA2T3 CEBPG MNT ZNF335 GATA3 BANP LOC400553 ZCCHC14 PIR49178
GH16J087962 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -29.0 -29035 5.2 ELF3 FOXA2 MLX ARID4B DMAP1 ZSCAN9 RCOR1 FOS THAP11 MXD4 CA5A BANP LOC400553 PIR49178
GH16J087982 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -10.6 -10604 1.8 CTCF FOXA2 USF1 RXRA NFIB USF2 MAX ZNF48 YY1 SP1 BANP LOC400553 PIR49178
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49178 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49178 Gene

Genomic Locations for PIR49178 Gene
chr16:87,994,038-87,994,064
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr16:88,027,644-88,027,670
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR49178 Gene

Genes around PIR49178 on UCSC Golden Path with GeneCards custom track

PIR49178 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49178 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49178 Gene

Function for PIR49178 Gene

Phenotypes From GWAS Catalog for PIR49178 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49178 Gene

Localization for PIR49178 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49178 Gene

Pathways & Interactions for PIR49178 Gene

SuperPathways for PIR49178 Gene

No Data Available

Interacting Proteins for PIR49178 Gene

Gene Ontology (GO) - Biological Process for PIR49178 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49178 Gene

Drugs & Compounds for PIR49178 Gene

No Compound Related Data Available

Transcripts for PIR49178 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49178 Gene

No ASD Table

Relevant External Links for PIR49178 Gene

GeneLoc Exon Structure for
PIR49178

No data available for mRNA/cDNA for PIR49178 Gene

Expression for PIR49178 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49178 Gene

Orthologs for PIR49178 Gene

No data available for Orthologs and Evolution for PIR49178 Gene

Paralogs for PIR49178 Gene

No data available for Paralogs for PIR49178 Gene

Variants for PIR49178 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49178 Gene

Disorders for PIR49178 Gene

No disorders were found for PIR49178 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49178 Gene

Publications for PIR49178 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49178 Gene

Sources for PIR49178 Gene

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