Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR49079 Gene

Subcategory (RNA class) for PIR49079 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR49079 Gene

No Aliases found

ORGUL Members for PIR49079 Gene

Previous GeneCards Identifiers for PIR49079 Gene

  • GC17P018227

No data available for External Ids for PIR49079 Gene

Summaries for PIR49079 Gene

GeneCards Summary for PIR49079 Gene

PIR49079 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49079 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49079 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49079 Gene

Genomics for PIR49079 Gene

GeneHancer (GH) Regulatory Elements for PIR49079 Gene

Promoters and enhancers for PIR49079 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J038296 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.7 -2.2 -2208 1.6 HDGF CLOCK FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 MRPL45 LOC105371760 TBC1D3 GC17P038300 PIR49079
GH17J038323 Enhancer 0.8 FANTOM5 ENCODE 0.3 +25.5 25454 2 SOX13 RFX1 CEBPG ZEB2 ZNF148 CTBP1 ATF4 SSRP1 PRDM1 SOCS7 MRPL45 TBC1D3 GPR179 PIR49079 GC17P038300
GH17J038341 Enhancer 0.7 ENCODE 0.3 +42.2 42187 0.2 ZBTB6 NFIB ZNF195 ZIC2 LCORL ZNF189 NFIA ZBTB8A ZNF491 ZSCAN21 GPR179 PIR49079 GC17P038300
GH17J038333 Enhancer 0.7 ENCODE 0.3 +34.5 34467 0.2 ZSCAN5A CTCF RB1 ZBTB21 ARNT KLF17 SIN3A ZNF2 RAD21 CC2D1A GPR179 GC17P038300 PIR49079
GH17J038320 Enhancer 0.6 ENCODE 0.3 +21.5 21518 1.6 CTCF ZNF687 CLOCK NRF1 SIN3A DPF2 ELF1 MNT ZNF217 CTBP1 GPR179 SOCS7 MRPL45 GC17P038300 PIR49079
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49079 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49079 Gene

Genomic Locations for PIR49079 Gene
chr17:38,299,386-38,299,415
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr17:18,227,676-18,227,705
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR49079 Gene

Genes around PIR49079 on UCSC Golden Path with GeneCards custom track

PIR49079 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49079 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49079 Gene

Function for PIR49079 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49079 Gene

Localization for PIR49079 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49079 Gene

Pathways & Interactions for PIR49079 Gene

SuperPathways for PIR49079 Gene

No Data Available

Interacting Proteins for PIR49079 Gene

Gene Ontology (GO) - Biological Process for PIR49079 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49079 Gene

Drugs & Compounds for PIR49079 Gene

No Compound Related Data Available

Transcripts for PIR49079 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49079 Gene

No ASD Table

Relevant External Links for PIR49079 Gene

GeneLoc Exon Structure for
PIR49079

No data available for mRNA/cDNA for PIR49079 Gene

Expression for PIR49079 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49079 Gene

Orthologs for PIR49079 Gene

No data available for Orthologs and Evolution for PIR49079 Gene

Paralogs for PIR49079 Gene

No data available for Paralogs for PIR49079 Gene

Variants for PIR49079 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49079 Gene

Disorders for PIR49079 Gene

No disorders were found for PIR49079 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49079 Gene

Publications for PIR49079 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49079 Gene

Sources for PIR49079 Gene

Content
Loading form....