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Aliases for PIR49052 Gene

Subcategory (RNA class) for PIR49052 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR49052 Gene

No Aliases found

ORGUL Members for PIR49052 Gene

Previous GeneCards Identifiers for PIR49052 Gene

  • GC08M019210

No data available for External Ids for PIR49052 Gene

Summaries for PIR49052 Gene

GeneCards Summary for PIR49052 Gene

PIR49052 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49052 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR49052

Additional gene information for PIR49052 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49052 Gene

Genomics for PIR49052 Gene

GeneHancer (GH) Regulatory Elements for PIR49052 Gene

Promoters and enhancers for PIR49052 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J019346 Enhancer 0.8 Ensembl ENCODE 0.4 +5.5 5482 2.1 SRF CTCF ZNF654 MAFG MEF2B BATF RAD21 MEF2D ZNF316 IKZF1 SH2D4A GC08M019353 GC08P019339 PIR49052 LOC102724881
GH08J019344 Enhancer 0.8 ENCODE 0.4 +7.5 7537 1.1 ELF3 FOXA2 ARID4B DMAP1 RAD21 RARA THAP11 MIXL1 RXRA MXD4 SH2D4A GC08M019353 GC08P019339 PIR49052 LOC102724881
GH08J019385 Enhancer 1 Ensembl ENCODE 0.3 -33.3 -33252 0.8 PKNOX1 FEZF1 BATF RAD21 ZNF350 ATF7 FOS IKZF2 RUNX3 JUNB LOC102724881 GC08M019353 PIR49052 SH2D4A
GH08J019372 Enhancer 0.6 ENCODE 0.4 -19.5 -19536 0.2 CTCF ZNF654 REST ZNF2 RAD21 SMC3 ZNF143 SETDB1 CSGALNACT1 SH2D4A INTS10 GC08M019353 PIR49052 LOC102724881
GH08J019389 Enhancer 0.5 ENCODE 0.3 -36.9 -36916 0.2 SP1 FOXA2 RXRA MAX HNF4A SPI1 CSGALNACT1 SH2D4A LOC102724881 PIR49052 GC08M019353
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49052 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49052 Gene

Genomic Locations for PIR49052 Gene
chr8:19,352,699-19,352,729
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr8:19,210,210-19,210,240
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR49052 Gene

Genes around PIR49052 on UCSC Golden Path with GeneCards custom track

PIR49052 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49052 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR49052 Gene

ORGUL Member Location for PIR49052 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49052 Gene

Function for PIR49052 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49052 Gene

Localization for PIR49052 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49052 Gene

Pathways & Interactions for PIR49052 Gene

SuperPathways for PIR49052 Gene

No Data Available

Interacting Proteins for PIR49052 Gene

Gene Ontology (GO) - Biological Process for PIR49052 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49052 Gene

Drugs & Compounds for PIR49052 Gene

No Compound Related Data Available

Transcripts for PIR49052 Gene

fRNAdb Secondary structures for PIR49052 Gene

  • FR021889

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49052 Gene

No ASD Table

Relevant External Links for PIR49052 Gene

GeneLoc Exon Structure for
PIR49052

No data available for mRNA/cDNA for PIR49052 Gene

Expression for PIR49052 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49052 Gene

Orthologs for PIR49052 Gene

No data available for Orthologs and Evolution for PIR49052 Gene

Paralogs for PIR49052 Gene

No data available for Paralogs for PIR49052 Gene

Variants for PIR49052 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49052 Gene

Disorders for PIR49052 Gene

No disorders were found for PIR49052 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49052 Gene

Publications for PIR49052 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49052 Gene

Sources for PIR49052 Gene

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