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Aliases for PIR49028 Gene

Subcategory (RNA class) for PIR49028 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR49028 Gene

No Aliases found

ORGUL Members for PIR49028 Gene

No data available for External Ids for PIR49028 Gene

Summaries for PIR49028 Gene

GeneCards Summary for PIR49028 Gene

PIR49028 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49028 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR49028 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49028 Gene

Genomics for PIR49028 Gene

GeneHancer (GH) Regulatory Elements for PIR49028 Gene

Promoters and enhancers for PIR49028 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I013872 Enhancer 1.3 Ensembl ENCODE 0.4 -8.3 -8333 2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF143 ZNF548 RANBP9 NOL7 RNF182 MCUR1 PIR49028 ENSG00000272209
GH06I013863 Enhancer 0.8 ENCODE 0.4 -17.9 -17905 0.7 HDAC1 FOXA2 RARA TCF12 ZNF366 FOS ATF7 NCOA1 REST ZEB2 RNF182 CD83 GFOD1-AS1 PIR49028 ENSG00000272209
GH06I013913 Enhancer 1 ENCODE 0.3 +31.3 31260 0.2 PKNOX1 ATF1 ARNT FEZF1 NCOA2 TCF12 GATA2 E2F8 FOS ATF7 RNF182 PIR49028
GH06I013908 Enhancer 0.8 ENCODE 0.3 +27.2 27170 0.2 HDAC1 ATF1 ARNT RAD21 RFX5 GATA2 ARID2 ZNF143 ATF7 RUNX3 CD83 RNF182 PIR49028
GH06I013916 Enhancer 0.7 ENCODE 0.3 +34.7 34685 1.1 MEIS2 TAL1 EBF1 CTBP1 ZNF316 GATA2 POLR2A SCRT2 SMARCE1 ZBTB2 RNF182 PIR49028
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49028 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49028 Gene

Genomic Locations for PIR49028 Gene
chr6:13,881,905-13,881,934
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr6:13,882,136-13,882,165
(GRCh37/hg19)

Genomic View for PIR49028 Gene

Genes around PIR49028 on UCSC Golden Path with GeneCards custom track

PIR49028 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49028 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49028 Gene

Proteins for PIR49028 Gene

Post-translational modifications for PIR49028 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49028 Gene

Domains & Families for PIR49028 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49028 Gene

Function for PIR49028 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49028 Gene

Localization for PIR49028 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49028 Gene

Pathways & Interactions for PIR49028 Gene

SuperPathways for PIR49028 Gene

No Data Available

Interacting Proteins for PIR49028 Gene

Gene Ontology (GO) - Biological Process for PIR49028 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49028 Gene

Drugs & Compounds for PIR49028 Gene

No Compound Related Data Available

Transcripts for PIR49028 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49028 Gene

No ASD Table

Relevant External Links for PIR49028 Gene

GeneLoc Exon Structure for
PIR49028

No data available for mRNA/cDNA for PIR49028 Gene

Expression for PIR49028 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49028 Gene

Orthologs for PIR49028 Gene

No data available for Orthologs and Evolution for PIR49028 Gene

Paralogs for PIR49028 Gene

No data available for Paralogs for PIR49028 Gene

Variants for PIR49028 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49028 Gene

Disorders for PIR49028 Gene

No disorders were found for PIR49028 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49028 Gene

Publications for PIR49028 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49028 Gene

Sources for PIR49028 Gene

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