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Aliases for PIR49020 Gene

Subcategory (RNA class) for PIR49020 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR49020 Gene

No Aliases found

ORGUL Members for PIR49020 Gene

Previous GeneCards Identifiers for PIR49020 Gene

  • GC08M049431

No data available for External Ids for PIR49020 Gene

Summaries for PIR49020 Gene

GeneCards Summary for PIR49020 Gene

PIR49020 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR49020 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR49020

Additional gene information for PIR49020 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR49020 Gene

Genomics for PIR49020 Gene

GeneHancer (GH) Regulatory Elements for PIR49020 Gene

Promoters and enhancers for PIR49020 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I048517 Enhancer 1 FANTOM5 ENCODE dbSUPER 550.8 +0.6 550 0.6 SMAD5 ZNF143 ELF1 IKZF2 SPI1 GC08M048519 PIR49020 LOC105375822 LOC101929268
GH08I048519 Enhancer 0.4 dbSUPER 550.8 -1.1 -1136 0.8 SRF ZNF316 GC08M048519 PIR49020 LOC105375822 LOC101929268
GH08I048521 Enhancer 0.8 ENCODE dbSUPER 0.8 -3.9 -3881 3.2 NFIB CBFB ZIC2 ZNF664 NFIC LCORL POLR2A IKZF1 MLLT1 RCOR1 LOC101929268 GC08M048519 PIR49020
GH08I048534 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.8 -17762 3.7 JUND RFX1 FOS BMI1 GABPA LOC101929268 PIR49020 GC08M048519
GH08I048541 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 -25.0 -24959 3.8 CTCF SP1 USF1 MAX ZNF143 USF2 REST LOC101929268 PIR49020 GC08M048519
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR49020 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR49020 Gene

Genomic Locations for PIR49020 Gene
chr8:48,518,759-48,518,789
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr8:49,431,319-49,431,349
(GRCh37/hg19)

Genomic View for PIR49020 Gene

Genes around PIR49020 on UCSC Golden Path with GeneCards custom track

PIR49020 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR49020 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR49020 Gene

ORGUL Member Location for PIR49020 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR49020 Gene

Proteins for PIR49020 Gene

Post-translational modifications for PIR49020 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR49020 Gene

Domains & Families for PIR49020 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR49020 Gene

Function for PIR49020 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR49020 Gene

Localization for PIR49020 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR49020 Gene

Pathways & Interactions for PIR49020 Gene

SuperPathways for PIR49020 Gene

No Data Available

Interacting Proteins for PIR49020 Gene

Gene Ontology (GO) - Biological Process for PIR49020 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR49020 Gene

Drugs & Compounds for PIR49020 Gene

No Compound Related Data Available

Transcripts for PIR49020 Gene

fRNAdb Secondary structures for PIR49020 Gene

  • FR248614

Alternative Splicing Database (ASD) splice patterns (SP) for PIR49020 Gene

No ASD Table

Relevant External Links for PIR49020 Gene

GeneLoc Exon Structure for
PIR49020

No data available for mRNA/cDNA for PIR49020 Gene

Expression for PIR49020 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR49020 Gene

Orthologs for PIR49020 Gene

No data available for Orthologs and Evolution for PIR49020 Gene

Paralogs for PIR49020 Gene

No data available for Paralogs for PIR49020 Gene

Variants for PIR49020 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR49020 Gene

Disorders for PIR49020 Gene

No disorders were found for PIR49020 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR49020 Gene

Publications for PIR49020 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR49020 Gene

Sources for PIR49020 Gene

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