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Aliases for PIR48968 Gene

Subcategory (RNA class) for PIR48968 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48968 Gene

No Aliases found

ORGUL Members for PIR48968 Gene

No data available for External Ids for PIR48968 Gene

Summaries for PIR48968 Gene

GeneCards Summary for PIR48968 Gene

PIR48968 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48968 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48968 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48968 Gene

Genomics for PIR48968 Gene

GeneHancer (GH) Regulatory Elements for PIR48968 Gene

Promoters and enhancers for PIR48968 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I050581 Enhancer 0.4 dbSUPER 550.8 +0.6 601 1.4 POLR2A CEBPG PIR48968 NKD1 ENSG00000205414 NOD2
GH16I050584 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 +4.3 4320 2.1 SMARCA5 CBX1 PHF20 ADNP ZMYM3 KDM1A NR2F2 PIR48968 ENSG00000205414 NKD1
GH16I050588 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +7.9 7945 1.6 MAX EBF1 BATF KLF5 IRF4 POLR2A ZNF143 ETV6 RUNX3 SRF PIR48968 ENSG00000205414 NKD1
GH16I050591 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +10.8 10758 1.5 CTCF MAX RAD21 YY1 ZSCAN5C ZBTB20 RXRA REST GABPA NR2F2 NOD2 PIR48968 ENSG00000205414 NKD1
GH16I050599 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +20.8 20824 4.8 NFIA CEBPB MAX ZMYM3 CEBPG ELF1 ZNF48 NR2F2 SSRP1 POLR2A NKD1 ENSG00000205414 PIR48968
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48968 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48968 Gene

Genomic Locations for PIR48968 Gene
chr16:50,581,401-50,581,430
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr16:50,615,312-50,615,341
(GRCh37/hg19)

Genomic View for PIR48968 Gene

Genes around PIR48968 on UCSC Golden Path with GeneCards custom track

PIR48968 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48968 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48968 Gene

Proteins for PIR48968 Gene

Post-translational modifications for PIR48968 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48968 Gene

Domains & Families for PIR48968 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48968 Gene

Function for PIR48968 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48968 Gene

Localization for PIR48968 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48968 Gene

Pathways & Interactions for PIR48968 Gene

SuperPathways for PIR48968 Gene

No Data Available

Interacting Proteins for PIR48968 Gene

Gene Ontology (GO) - Biological Process for PIR48968 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48968 Gene

Drugs & Compounds for PIR48968 Gene

No Compound Related Data Available

Transcripts for PIR48968 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48968 Gene

No ASD Table

Relevant External Links for PIR48968 Gene

GeneLoc Exon Structure for
PIR48968

No data available for mRNA/cDNA for PIR48968 Gene

Expression for PIR48968 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48968 Gene

Orthologs for PIR48968 Gene

No data available for Orthologs and Evolution for PIR48968 Gene

Paralogs for PIR48968 Gene

No data available for Paralogs for PIR48968 Gene

Variants for PIR48968 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48968 Gene

Disorders for PIR48968 Gene

No disorders were found for PIR48968 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48968 Gene

Publications for PIR48968 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48968 Gene

Sources for PIR48968 Gene

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