Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR48956 Gene

Subcategory (RNA class) for PIR48956 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48956 Gene

No Aliases found

ORGUL Members for PIR48956 Gene

Previous GeneCards Identifiers for PIR48956 Gene

  • GC17M004997
  • GC17M004998
  • GC17M005000
  • GC17M005002
  • GC17M005005

No data available for External Ids for PIR48956 Gene

Summaries for PIR48956 Gene

GeneCards Summary for PIR48956 Gene

PIR48956 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48956 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48956 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48956 Gene

Genomics for PIR48956 Gene

GeneHancer (GH) Regulatory Elements for PIR48956 Gene

Promoters and enhancers for PIR48956 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I010085 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +0.1 132 2.3 INSM2 BMI1 RFX5 GLIS2 ZNF366 FOS KLF13 TSHZ1 ZNF843 RFX3 GC17M010087 PIR48956 GC17M010055 GAS7
GH17I010084 Enhancer 0.2 dbSUPER 550.8 +1.9 1865 0.8 GC17M010087 PIR48956 GC17M010055 GAS7
GH17I010058 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.4 25353 6.2 CTCF MXI1 MAX EBF1 BMI1 BATF ZIC2 IRF4 RELA POLR2A GAS7 PIRT GC17M010055 GC17M010087 PIR48956
GH17I010077 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.4 +8.9 8925 1.2 GATA3 ZNF624 SETDB1 PIR48956 GC17M010087 GC17M010055 GAS7
GH17I010095 Enhancer 0.7 ENCODE dbSUPER 0.4 -8.5 -8510 0.2 JUND GLIS1 GFI1B FOSL2 FOS TCF7L2 GC17P010097 PIR48956 GC17M010087 GAS7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48956 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48956 Gene

Genomic Locations for PIR48956 Gene
chr17:10,086,939-10,086,969
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr17:4,995,128-4,995,158
(GRCh37/hg19)

Genomic View for PIR48956 Gene

Genes around PIR48956 on UCSC Golden Path with GeneCards custom track

PIR48956 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48956 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48956 Gene

Proteins for PIR48956 Gene

Post-translational modifications for PIR48956 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48956 Gene

Domains & Families for PIR48956 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48956 Gene

Function for PIR48956 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48956 Gene

Localization for PIR48956 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48956 Gene

Pathways & Interactions for PIR48956 Gene

SuperPathways for PIR48956 Gene

No Data Available

Interacting Proteins for PIR48956 Gene

Gene Ontology (GO) - Biological Process for PIR48956 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48956 Gene

Drugs & Compounds for PIR48956 Gene

No Compound Related Data Available

Transcripts for PIR48956 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48956 Gene

No ASD Table

Relevant External Links for PIR48956 Gene

GeneLoc Exon Structure for
PIR48956

No data available for mRNA/cDNA for PIR48956 Gene

Expression for PIR48956 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48956 Gene

Orthologs for PIR48956 Gene

No data available for Orthologs and Evolution for PIR48956 Gene

Paralogs for PIR48956 Gene

No data available for Paralogs for PIR48956 Gene

Variants for PIR48956 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48956 Gene

Disorders for PIR48956 Gene

No disorders were found for PIR48956 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48956 Gene

Publications for PIR48956 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48956 Gene

Sources for PIR48956 Gene

Content
Loading form....