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Aliases for PIR48953 Gene

Subcategory (RNA class) for PIR48953 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48953 Gene

No Aliases found

ORGUL Members for PIR48953 Gene

Previous GeneCards Identifiers for PIR48953 Gene

  • GC03P012912
  • GC03P012876
  • GC03P012885
  • GC03P012899
  • GC03P012958
  • GC03P012975
  • GC03P012983
  • GC03P013011

No data available for External Ids for PIR48953 Gene

Summaries for PIR48953 Gene

GeneCards Summary for PIR48953 Gene

PIR48953 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48953 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48953 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48953 Gene

Genomics for PIR48953 Gene

GeneHancer (GH) Regulatory Elements for PIR48953 Gene

Promoters and enhancers for PIR48953 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I012867 Enhancer 1.4 FANTOM5 Ensembl ENCODE 550.8 -1.3 -1337 2 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 POLR2B ZNF143 FOS SP3 GC03M014401 GC03M014417 GC03M014425 GC03M014438 GC03M014453 GC03P012869 PIR48953 PIR32651 PIR33230 PIR50197
GH03I012870 Enhancer 0.7 FANTOM5 ENCODE 550.8 +1.2 1207 0.8 ATF1 CREB1 HNF4A ATF7 ATF2 CREM GC03M014425 GC03M014449 GC03M014465 GC03P012869 PIR40824 PIR48953 PIR32538 PIR32651 PIR50197 PIR33267
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48953 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48953 Gene

Genomic Locations for PIR48953 Gene
chr3:12,869,942-12,869,972
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr3:12,911,441-12,911,471
(GRCh37/hg19)

Genomic View for PIR48953 Gene

Genes around PIR48953 on UCSC Golden Path with GeneCards custom track

PIR48953 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48953 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48953 Gene

ORGUL Member Location for PIR48953 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48953 Gene

Proteins for PIR48953 Gene

Post-translational modifications for PIR48953 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48953 Gene

Domains & Families for PIR48953 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48953 Gene

Function for PIR48953 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48953 Gene

Localization for PIR48953 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48953 Gene

Pathways & Interactions for PIR48953 Gene

SuperPathways for PIR48953 Gene

No Data Available

Interacting Proteins for PIR48953 Gene

Gene Ontology (GO) - Biological Process for PIR48953 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48953 Gene

Drugs & Compounds for PIR48953 Gene

No Compound Related Data Available

Transcripts for PIR48953 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48953 Gene

No ASD Table

Relevant External Links for PIR48953 Gene

GeneLoc Exon Structure for
PIR48953

No data available for mRNA/cDNA for PIR48953 Gene

Expression for PIR48953 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48953 Gene

Orthologs for PIR48953 Gene

No data available for Orthologs and Evolution for PIR48953 Gene

Paralogs for PIR48953 Gene

No data available for Paralogs for PIR48953 Gene

Variants for PIR48953 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48953 Gene

Disorders for PIR48953 Gene

No disorders were found for PIR48953 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48953 Gene

Publications for PIR48953 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48953 Gene

Sources for PIR48953 Gene

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