Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR48952 Gene

Subcategory (RNA class) for PIR48952 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48952 Gene

No Aliases found

ORGUL Members for PIR48952 Gene

No data available for External Ids for PIR48952 Gene

Summaries for PIR48952 Gene

GeneCards Summary for PIR48952 Gene

PIR48952 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48952 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48952 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48952 Gene

Genomics for PIR48952 Gene

GeneHancer (GH) Regulatory Elements for PIR48952 Gene

Promoters and enhancers for PIR48952 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J021911 Enhancer 0.6 ENCODE dbSUPER 650.7 +1.7 1696 1.4 ZFHX2 MNT EGR2 GC07M021906 PIR48952 CDCA7L
GH07J021897 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -11.8 -11812 1.8 IRF4 POLR2A ZFP91 ATF7 IKZF2 RUNX3 BHLHE40 TRIM22 DPF2 ELF1 CDCA7L PIR48952 GC07P021597 DNAH11
GH07J021869 Enhancer 0.6 ENCODE 0.3 -40.2 -40206 1.1 MAFG BACH1 ZNF316 SCRT2 NFE2 MAFK EMSY NFE2L2 CDCA7L PIR48952 GC07P021597 DNAH11
GH07J021868 Enhancer 0.5 ENCODE 0.3 -41.6 -41579 1.1 NANOG POLR2A SCRT2 CEBPB POU5F1 CDCA7L PIR48952 GC07P021597 DNAH11
GH07J021771 Enhancer 1.5 VISTA UCNEbase ENCODE 0.1 -137.9 -137917 1.2 MEIS2 PKNOX1 ATF1 TEAD4 TAL1 ETS1 FOSL1 TCF12 POLR2A NCOR1 CDCA7L LOC100506178 PIR48952 GC07P021597 DNAH11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48952 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48952 Gene

Genomic Locations for PIR48952 Gene
chr7:21,910,281-21,910,308
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr7:21,949,899-21,949,926
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48952 Gene

Genes around PIR48952 on UCSC Golden Path with GeneCards custom track

PIR48952 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48952 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48952 Gene

Function for PIR48952 Gene

Phenotypes From GWAS Catalog for PIR48952 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48952 Gene

Localization for PIR48952 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48952 Gene

Pathways & Interactions for PIR48952 Gene

SuperPathways for PIR48952 Gene

No Data Available

Interacting Proteins for PIR48952 Gene

Gene Ontology (GO) - Biological Process for PIR48952 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48952 Gene

Drugs & Compounds for PIR48952 Gene

No Compound Related Data Available

Transcripts for PIR48952 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48952 Gene

No ASD Table

Relevant External Links for PIR48952 Gene

GeneLoc Exon Structure for
PIR48952

No data available for mRNA/cDNA for PIR48952 Gene

Expression for PIR48952 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48952 Gene

Orthologs for PIR48952 Gene

No data available for Orthologs and Evolution for PIR48952 Gene

Paralogs for PIR48952 Gene

No data available for Paralogs for PIR48952 Gene

Variants for PIR48952 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48952 Gene

Disorders for PIR48952 Gene

No disorders were found for PIR48952 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48952 Gene

Publications for PIR48952 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48952 Gene

Sources for PIR48952 Gene

Content
Loading form....