Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR48934 Gene

Subcategory (RNA class) for PIR48934 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48934 Gene

No Aliases found

ORGUL Members for PIR48934 Gene

Previous GeneCards Identifiers for PIR48934 Gene

  • GC11P075953

No data available for External Ids for PIR48934 Gene

Summaries for PIR48934 Gene

GeneCards Summary for PIR48934 Gene

PIR48934 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48934 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48934 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48934 Gene

Genomics for PIR48934 Gene

GeneHancer (GH) Regulatory Elements for PIR48934 Gene

Promoters and enhancers for PIR48934 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J076243 Enhancer 0.5 ENCODE 650.7 +0.5 491 0.1 SP1 ZNF143 SIN3A PRDM10 PIR48934 WNT11 LOC105369395
GH11J076238 Enhancer 0.9 ENCODE dbSUPER 0.7 -4.8 -4799 0.2 HDAC1 BCOR ELF3 CTCF PTBP1 PKNOX1 ZMYM3 RAD21 GTF3C2 ZNF366 RPS3 GC11M076236 PIR48934 PIR59119 TRP-TGG2-1
GH11J076264 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +23.6 23581 3.1 MXI1 JUN BRCA1 RFX5 FOSL1 GATA3 POLR2A SMARCC2 RCOR1 FOSL2 WNT11 LOC105369395 PIR48934
GH11J076250 Enhancer 0.8 Ensembl ENCODE 0.4 +8.5 8538 1.3 ZNF680 CEBPB CEBPG SP1 ZNF280A CBX5 STAT3 SETDB1 SPI1 WNT11 PIR48934 LOC105369395
GH11J076268 Enhancer 1 ENCODE dbSUPER 0.3 +27.2 27236 2.5 FOXA2 NFIB YBX1 BRCA1 RAD21 RFX5 YY1 ZNF366 RCOR1 FOS RPS3 EMSY SNORD15B ENSG00000255434 LOC105369395 PIR48934
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48934 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48934 Gene

Genomic Locations for PIR48934 Gene
chr11:76,242,891-76,242,919
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr11:75,953,935-75,953,963
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR48934 Gene

Genes around PIR48934 on UCSC Golden Path with GeneCards custom track

PIR48934 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48934 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48934 Gene

Function for PIR48934 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48934 Gene

Localization for PIR48934 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48934 Gene

Pathways & Interactions for PIR48934 Gene

SuperPathways for PIR48934 Gene

No Data Available

Interacting Proteins for PIR48934 Gene

Gene Ontology (GO) - Biological Process for PIR48934 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48934 Gene

Drugs & Compounds for PIR48934 Gene

No Compound Related Data Available

Transcripts for PIR48934 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48934 Gene

No ASD Table

Relevant External Links for PIR48934 Gene

GeneLoc Exon Structure for
PIR48934

No data available for mRNA/cDNA for PIR48934 Gene

Expression for PIR48934 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48934 Gene

Orthologs for PIR48934 Gene

No data available for Orthologs and Evolution for PIR48934 Gene

Paralogs for PIR48934 Gene

No data available for Paralogs for PIR48934 Gene

Variants for PIR48934 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48934 Gene

Disorders for PIR48934 Gene

No disorders were found for PIR48934 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48934 Gene

Publications for PIR48934 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48934 Gene

Sources for PIR48934 Gene

Content
Loading form....