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Aliases for PIR48909 Gene

Subcategory (RNA class) for PIR48909 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48909 Gene

No Aliases found

ORGUL Members for PIR48909 Gene

Previous GeneCards Identifiers for PIR48909 Gene

  • GC16P004920

No data available for External Ids for PIR48909 Gene

Summaries for PIR48909 Gene

GeneCards Summary for PIR48909 Gene

PIR48909 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48909 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48909 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48909 Gene

Genomics for PIR48909 Gene

GeneHancer (GH) Regulatory Elements for PIR48909 Gene

Promoters and enhancers for PIR48909 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I004867 Enhancer 0.7 ENCODE dbSUPER 550.8 -1.7 -1682 3.6 GATA3 FOXA2 RXRA MNT FOXA1 PIR48909 UBN1 SEPT12 ZNF500 GLYR1 NUDT16L1 PPL SMIM22 ENSG00000267077 MGRN1
GH16I004872 Enhancer 0.4 ENCODE dbSUPER 0.8 +3.8 3809 3.2 PIR38578 UBN1 GLYR1 NUDT16L1 PPL ZNF500 SEPT12 PIR48909
GH16I004862 Enhancer 0.7 FANTOM5 0.4 -7.8 -7791 0.2 FOXA2 RXRA HLF MAX RAD21 FOXA1 YY1 GABPA JUND POLR2A GC16P004860 PIR31758 UBN1 SEPT12 MGRN1 CORO7 GLYR1 PIR48909
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48909 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48909 Gene

Genomic Locations for PIR48909 Gene
chr16:4,870,582-4,870,611
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr16:4,920,583-4,920,612
(GRCh37/hg19)

Genomic View for PIR48909 Gene

Genes around PIR48909 on UCSC Golden Path with GeneCards custom track

PIR48909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48909 Gene

Proteins for PIR48909 Gene

Post-translational modifications for PIR48909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48909 Gene

Domains & Families for PIR48909 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48909 Gene

Function for PIR48909 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48909 Gene

Localization for PIR48909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48909 Gene

Pathways & Interactions for PIR48909 Gene

SuperPathways for PIR48909 Gene

No Data Available

Interacting Proteins for PIR48909 Gene

Gene Ontology (GO) - Biological Process for PIR48909 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48909 Gene

Drugs & Compounds for PIR48909 Gene

No Compound Related Data Available

Transcripts for PIR48909 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48909 Gene

No ASD Table

Relevant External Links for PIR48909 Gene

GeneLoc Exon Structure for
PIR48909

No data available for mRNA/cDNA for PIR48909 Gene

Expression for PIR48909 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48909 Gene

Orthologs for PIR48909 Gene

No data available for Orthologs and Evolution for PIR48909 Gene

Paralogs for PIR48909 Gene

No data available for Paralogs for PIR48909 Gene

Variants for PIR48909 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48909 Gene

Disorders for PIR48909 Gene

No disorders were found for PIR48909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48909 Gene

Publications for PIR48909 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48909 Gene

Sources for PIR48909 Gene

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