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Aliases for PIR48907 Gene

Subcategory (RNA class) for PIR48907 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48907 Gene

No Aliases found

ORGUL Members for PIR48907 Gene

Previous GeneCards Identifiers for PIR48907 Gene

  • GC02M064242

No data available for External Ids for PIR48907 Gene

Summaries for PIR48907 Gene

GeneCards Summary for PIR48907 Gene

PIR48907 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48907 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48907

Additional gene information for PIR48907 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48907 Gene

Genomics for PIR48907 Gene

GeneHancer (GH) Regulatory Elements for PIR48907 Gene

Promoters and enhancers for PIR48907 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I064014 Enhancer 0.6 Ensembl 550.8 +0.1 88 1.8 ZNF3 ZNF740 ZMYM3 ELF1 GABPA ZNF592 CUX1 HOMEZ NR2C2 GC02M064016 PIR48907 VPS54 GC02M063913 GC02M063958
GH02I064016 Enhancer 0.2 Ensembl 550.8 -1.2 -1212 0.4 GC02M064016 PIR48907 VPS54 GC02M063958
GH02I063983 Enhancer 1.1 Ensembl ENCODE 0.3 +30.4 30396 2.8 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 GTF3C2 SLC30A9 PAF1 WDPCP GC02M064016 PIR48907 VPS54 GC02M063913 GC02M063958
GH02I063992 Enhancer 0.8 ENCODE 0.3 +22.1 22073 1.3 ELF3 ARID4B DMAP1 RAD21 THRB RARA CREM THAP11 MIXL1 HMG20B ENSG00000251775 LOC100507006 PIR48907 GC02M064016 VPS54 GC02M063913 GC02M063958
GH02I063977 Enhancer 0.6 ENCODE 0.3 +37.6 37604 1.4 SRF NR2F1 JUNB EBF1 BATF IRF4 IKZF1 ETV6 IKZF2 RUNX3 MDH1 GC02M064016 PIR48907 VPS54 GC02M063913 GC02M063958
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48907 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48907 Gene

Genomic Locations for PIR48907 Gene
chr2:64,015,558-64,015,589
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand
chr2:64,242,692-64,242,723
(GRCh37/hg19)

Genomic View for PIR48907 Gene

Genes around PIR48907 on UCSC Golden Path with GeneCards custom track

PIR48907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48907 Gene

ORGUL Member Location for PIR48907 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48907 Gene

Proteins for PIR48907 Gene

Post-translational modifications for PIR48907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48907 Gene

Domains & Families for PIR48907 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48907 Gene

Function for PIR48907 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48907 Gene

Localization for PIR48907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48907 Gene

Pathways & Interactions for PIR48907 Gene

SuperPathways for PIR48907 Gene

No Data Available

Interacting Proteins for PIR48907 Gene

Gene Ontology (GO) - Biological Process for PIR48907 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48907 Gene

Drugs & Compounds for PIR48907 Gene

No Compound Related Data Available

Transcripts for PIR48907 Gene

fRNAdb Secondary structures for PIR48907 Gene

  • FR019242

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48907 Gene

No ASD Table

Relevant External Links for PIR48907 Gene

GeneLoc Exon Structure for
PIR48907

No data available for mRNA/cDNA for PIR48907 Gene

Expression for PIR48907 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48907 Gene

Orthologs for PIR48907 Gene

No data available for Orthologs and Evolution for PIR48907 Gene

Paralogs for PIR48907 Gene

No data available for Paralogs for PIR48907 Gene

Variants for PIR48907 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48907 Gene

Disorders for PIR48907 Gene

No disorders were found for PIR48907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48907 Gene

Publications for PIR48907 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48907 Gene

Sources for PIR48907 Gene

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