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Aliases for PIR48893 Gene

Subcategory (RNA class) for PIR48893 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48893 Gene

No Aliases found

ORGUL Members for PIR48893 Gene

Previous GeneCards Identifiers for PIR48893 Gene

  • GC09M097871

No data available for External Ids for PIR48893 Gene

Summaries for PIR48893 Gene

GeneCards Summary for PIR48893 Gene

PIR48893 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48893 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48893 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48893 Gene

Genomics for PIR48893 Gene

GeneHancer (GH) Regulatory Elements for PIR48893 Gene

Promoters and enhancers for PIR48893 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J095106 Enhancer 0.6 ENCODE dbSUPER 650.7 +1.7 1664 2.3 ZNF316 MAFK PIR48893 MIR23B MIR27B MIR3074 PIR51992 FANCC C9orf3
GH09J095104 Enhancer 0.6 ENCODE dbSUPER 0.7 +4.7 4687 0.4 POLR2A CHD2 FBP1 PIR48893 PIR51992 FANCC C9orf3
GH09J095105 Enhancer 0.6 ENCODE dbSUPER 0.7 +3.6 3592 1.1 JUND POLR2A FOS FBP1 PIR48893 PIR51992 FANCC C9orf3
GH09J095099 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +7.5 7487 3.8 CTCF NFIC NFIB ZIC2 RAD21 RFX5 PIR51992 FBP1 C9orf3 PIR48893 FANCC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48893 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48893 Gene

Genomic Locations for PIR48893 Gene
chr9:95,109,256-95,109,284
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr9:97,871,538-97,871,566
(GRCh37/hg19)
Size:
29 bases
Orientation:
Minus strand

Genomic View for PIR48893 Gene

Genes around PIR48893 on UCSC Golden Path with GeneCards custom track

PIR48893 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48893 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48893 Gene

Function for PIR48893 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48893 Gene

Localization for PIR48893 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48893 Gene

Pathways & Interactions for PIR48893 Gene

SuperPathways for PIR48893 Gene

No Data Available

Interacting Proteins for PIR48893 Gene

Gene Ontology (GO) - Biological Process for PIR48893 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48893 Gene

Drugs & Compounds for PIR48893 Gene

No Compound Related Data Available

Transcripts for PIR48893 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48893 Gene

No ASD Table

Relevant External Links for PIR48893 Gene

GeneLoc Exon Structure for
PIR48893

No data available for mRNA/cDNA for PIR48893 Gene

Expression for PIR48893 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48893 Gene

Orthologs for PIR48893 Gene

No data available for Orthologs and Evolution for PIR48893 Gene

Paralogs for PIR48893 Gene

No data available for Paralogs for PIR48893 Gene

Variants for PIR48893 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48893 Gene

Disorders for PIR48893 Gene

No disorders were found for PIR48893 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48893 Gene

Publications for PIR48893 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48893 Gene

Sources for PIR48893 Gene

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