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Aliases for PIR48862 Gene

Subcategory (RNA class) for PIR48862 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48862 Gene

No Aliases found

ORGUL Members for PIR48862 Gene

Previous GeneCards Identifiers for PIR48862 Gene

  • GC06P166824

No data available for External Ids for PIR48862 Gene

Summaries for PIR48862 Gene

GeneCards Summary for PIR48862 Gene

PIR48862 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48862 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48862 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48862 Gene

Genomics for PIR48862 Gene

GeneHancer (GH) Regulatory Elements for PIR48862 Gene

Promoters and enhancers for PIR48862 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J166410 Enhancer 0.6 Ensembl ENCODE 650.7 +1.0 1035 1.6 EBF1 MLLT1 PIR48862 MPC1 PRR18 FGFR1OP LOC105378120 PIR46600 RPS6KA2
GH06J166416 Enhancer 0.9 ENCODE 0.4 +8.2 8193 4.2 PKNOX1 FOXA2 ZNF48 ZNF207 ATF7 RUNX3 RXRA PPARG KAT8 NFIL3 MPC1 PRR18 SFT2D1 HNRNPA1P49 PIR46600 PIR48862 RPS6KA2
GH06J166394 Enhancer 0.9 ENCODE 0.4 -15.9 -15889 0.2 FOXA2 MLX ARID4B DMAP1 ZNF48 RXRA NFYC MXD4 REST PPARG PIR31641 PRR18 SFT2D1 PIR48862
GH06J166412 Enhancer 0.5 ENCODE 0.7 +2.8 2776 1.3 CTCF MITF RAD51 NFIA USF2 CBFA2T2 MPC1 PRR18 PIR48862 PIR46600 RPS6KA2
GH06J166400 Enhancer 0.8 ENCODE 0.4 -9.6 -9609 0.2 ELF3 RB1 ARID4B ZNF2 THRB ZNF48 RAD21 ARID2 ZNF143 BCLAF1 PRR18 SFT2D1 PIR31641 PIR48862
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48862 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48862 Gene

Genomic Locations for PIR48862 Gene
chr6:166,410,597-166,410,626
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr6:166,824,085-166,824,114
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR48862 Gene

Genes around PIR48862 on UCSC Golden Path with GeneCards custom track

PIR48862 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48862 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48862 Gene

Function for PIR48862 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48862 Gene

Localization for PIR48862 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48862 Gene

Pathways & Interactions for PIR48862 Gene

SuperPathways for PIR48862 Gene

No Data Available

Interacting Proteins for PIR48862 Gene

Gene Ontology (GO) - Biological Process for PIR48862 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48862 Gene

Drugs & Compounds for PIR48862 Gene

No Compound Related Data Available

Transcripts for PIR48862 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48862 Gene

No ASD Table

Relevant External Links for PIR48862 Gene

GeneLoc Exon Structure for
PIR48862

No data available for mRNA/cDNA for PIR48862 Gene

Expression for PIR48862 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48862 Gene

Orthologs for PIR48862 Gene

No data available for Orthologs and Evolution for PIR48862 Gene

Paralogs for PIR48862 Gene

No data available for Paralogs for PIR48862 Gene

Variants for PIR48862 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48862 Gene

Disorders for PIR48862 Gene

No disorders were found for PIR48862 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48862 Gene

Publications for PIR48862 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48862 Gene

Sources for PIR48862 Gene

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