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Aliases for PIR48853 Gene

Subcategory (RNA class) for PIR48853 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48853 Gene

No Aliases found

ORGUL Members for PIR48853 Gene

Previous GeneCards Identifiers for PIR48853 Gene

  • GC07P044061

No data available for External Ids for PIR48853 Gene

Summaries for PIR48853 Gene

GeneCards Summary for PIR48853 Gene

PIR48853 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48853 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48853 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48853 Gene

Genomics for PIR48853 Gene

GeneHancer (GH) Regulatory Elements for PIR48853 Gene

Promoters and enhancers for PIR48853 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I044020 Enhancer 0.8 ENCODE 550.8 -1.8 -1793 0.2 CTCF RB1 KLF17 IRF3 BMI1 ZNF2 RAD21 ZNF213 SCRT2 SMC3 ENSG00000273432 PIR48853 POLR2J4 RASA4CP
GH07I044021 Enhancer 0.2 Ensembl 550.8 -0.9 -869 0.2 PIR48853 POLR2J4
GH07I044018 Promoter/Enhancer 1.6 Ensembl ENCODE 0.8 -2.9 -2917 1.7 HDGF MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B ENSG00000273432 POLR2J4 POLM DDX56 ENSG00000228434 SPDYE1 SNHG15 PIR48853
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48853 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48853 Gene

Genomic Locations for PIR48853 Gene
chr7:44,022,170-44,022,198
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr7:44,061,769-44,061,797
(GRCh37/hg19)

Genomic View for PIR48853 Gene

Genes around PIR48853 on UCSC Golden Path with GeneCards custom track

PIR48853 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48853 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48853 Gene

Proteins for PIR48853 Gene

Post-translational modifications for PIR48853 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48853 Gene

Domains & Families for PIR48853 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48853 Gene

Function for PIR48853 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48853 Gene

Localization for PIR48853 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48853 Gene

Pathways & Interactions for PIR48853 Gene

SuperPathways for PIR48853 Gene

No Data Available

Interacting Proteins for PIR48853 Gene

Gene Ontology (GO) - Biological Process for PIR48853 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48853 Gene

Drugs & Compounds for PIR48853 Gene

No Compound Related Data Available

Transcripts for PIR48853 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48853 Gene

No ASD Table

Relevant External Links for PIR48853 Gene

GeneLoc Exon Structure for
PIR48853

No data available for mRNA/cDNA for PIR48853 Gene

Expression for PIR48853 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48853 Gene

Orthologs for PIR48853 Gene

No data available for Orthologs and Evolution for PIR48853 Gene

Paralogs for PIR48853 Gene

No data available for Paralogs for PIR48853 Gene

Variants for PIR48853 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48853 Gene

Disorders for PIR48853 Gene

No disorders were found for PIR48853 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48853 Gene

Publications for PIR48853 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48853 Gene

Sources for PIR48853 Gene

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