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Aliases for PIR48819 Gene

Subcategory (RNA class) for PIR48819 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48819 Gene

No Aliases found

ORGUL Members for PIR48819 Gene

Previous GeneCards Identifiers for PIR48819 Gene

  • GC07P098946

No data available for External Ids for PIR48819 Gene

Summaries for PIR48819 Gene

GeneCards Summary for PIR48819 Gene

PIR48819 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48819 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48819 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48819 Gene

Genomics for PIR48819 Gene

GeneHancer (GH) Regulatory Elements for PIR48819 Gene

Promoters and enhancers for PIR48819 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I099324 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 -20.3 -20268 7.3 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 NFYC MEF2D ARPC1A TRRAP ZSCAN25 ENSG00000242798 ZNF655 ZNF3 ARPC1B CPSF4 PTCD1 TRIM4
GH07I099371 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.8 23844 1.6 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 ATF7 RXRA SP5 NFYC ARPC1B ATP5MF PILRB CPSF4 PTCD1 PIR48819 ENSG00000284292
GH07I099362 Enhancer 0.7 ENCODE 0.4 +14.3 14255 1.6 TEAD4 TAL1 BACH1 FOSL1 TCF12 ZNF766 ZNF316 FOXK2 NCOR1 VEZF1 BUD31 PDAP1 LAMTOR4 ATP5MF ARPC1B PIR48819 ARPC1A ENSG00000284292
GH07I099365 Enhancer 0.7 ENCODE 0.4 +16.8 16797 0.2 CTCF KLF1 RB1 KLF17 BACH1 SIN3A ZNF384 ZNF48 RAD21 ZNF121 ARPC1B BUD31 PDAP1 PIR48819 ARPC1A ENSG00000284292
GH07I099369 Enhancer 0.8 ENCODE 0.3 +21.3 21346 1 HDAC1 ATF1 ZNF766 GLIS2 EGR1 ATF7 CREM ZNF362 REST ZEB2 ARPC1B PIR48819 ENSG00000284292
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48819 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48819 Gene

Genomic Locations for PIR48819 Gene
chr7:99,348,906-99,348,935
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr7:98,946,529-98,946,558
(GRCh37/hg19)

Genomic View for PIR48819 Gene

Genes around PIR48819 on UCSC Golden Path with GeneCards custom track

PIR48819 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48819 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48819 Gene

Proteins for PIR48819 Gene

Post-translational modifications for PIR48819 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48819 Gene

Domains & Families for PIR48819 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48819 Gene

Function for PIR48819 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48819 Gene

Localization for PIR48819 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48819 Gene

Pathways & Interactions for PIR48819 Gene

SuperPathways for PIR48819 Gene

No Data Available

Interacting Proteins for PIR48819 Gene

Gene Ontology (GO) - Biological Process for PIR48819 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48819 Gene

Drugs & Compounds for PIR48819 Gene

No Compound Related Data Available

Transcripts for PIR48819 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48819 Gene

No ASD Table

Relevant External Links for PIR48819 Gene

GeneLoc Exon Structure for
PIR48819

No data available for mRNA/cDNA for PIR48819 Gene

Expression for PIR48819 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48819 Gene

Orthologs for PIR48819 Gene

No data available for Orthologs and Evolution for PIR48819 Gene

Paralogs for PIR48819 Gene

No data available for Paralogs for PIR48819 Gene

Variants for PIR48819 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48819 Gene

Disorders for PIR48819 Gene

No disorders were found for PIR48819 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48819 Gene

Publications for PIR48819 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48819 Gene

Sources for PIR48819 Gene

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