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Aliases for PIR48800 Gene

Subcategory (RNA class) for PIR48800 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48800 Gene

No Aliases found

ORGUL Members for PIR48800 Gene

Previous GeneCards Identifiers for PIR48800 Gene

  • GC01P033520

No data available for External Ids for PIR48800 Gene

Summaries for PIR48800 Gene

GeneCards Summary for PIR48800 Gene

PIR48800 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48800 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48800 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48800 Gene

Genomics for PIR48800 Gene

GeneHancer (GH) Regulatory Elements for PIR48800 Gene

Promoters and enhancers for PIR48800 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J033054 Enhancer 1.2 Ensembl ENCODE 650.7 +1.0 1003 1.1 HDGF FOXA2 PKNOX1 ATF1 ARNT BRCA1 ZNF48 YY1 TCF12 ZNF143 PIR48800 GC01P033068 AK2
GH01J033035 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 -18.1 -18052 2.6 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ZNF610 AK2 TXLNA KPNA6 RBBP4 TSSK3 ZBTB8A ZSCAN20 EIF3I FAM229A ZBTB8B
GH01J033046 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.4 -5391 4.2 ELF3 ATF1 NFRKB DNMT3B RAD21 RFX5 EGR1 RCOR1 FOS ATF7 RNF19B RBBP4 ENSG00000239670 TMEM39B TXLNA TSSK3 S100PBP AK2 AZIN2 FAM229A
GH01J033044 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.9 -8923 1.7 HDAC1 PKNOX1 ATF1 MLX INSM2 ZNF366 ATF7 CREM RXRA NFYC ENSG00000239670 AK2 AZIN2 RNF19B FNDC5 PHC2 PIR48800 ENSG00000276645
GH01J033058 Enhancer 0.6 Ensembl dbSUPER 0.7 +4.0 3983 0.4 PPARG SPI1 RXRB ENSG00000239670 PIR48800 GC01P033068 AK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48800 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48800 Gene

Genomic Locations for PIR48800 Gene
chr1:33,054,472-33,054,499
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr1:33,520,073-33,520,100
(GRCh37/hg19)

Genomic View for PIR48800 Gene

Genes around PIR48800 on UCSC Golden Path with GeneCards custom track

PIR48800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48800 Gene

Function for PIR48800 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48800 Gene

Localization for PIR48800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48800 Gene

Pathways & Interactions for PIR48800 Gene

SuperPathways for PIR48800 Gene

No Data Available

Interacting Proteins for PIR48800 Gene

Gene Ontology (GO) - Biological Process for PIR48800 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48800 Gene

Drugs & Compounds for PIR48800 Gene

No Compound Related Data Available

Transcripts for PIR48800 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48800 Gene

No ASD Table

Relevant External Links for PIR48800 Gene

GeneLoc Exon Structure for
PIR48800

No data available for mRNA/cDNA for PIR48800 Gene

Expression for PIR48800 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48800 Gene

Orthologs for PIR48800 Gene

No data available for Orthologs and Evolution for PIR48800 Gene

Paralogs for PIR48800 Gene

No data available for Paralogs for PIR48800 Gene

Variants for PIR48800 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48800 Gene

Disorders for PIR48800 Gene

No disorders were found for PIR48800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48800 Gene

Publications for PIR48800 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48800 Gene

Sources for PIR48800 Gene

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