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Aliases for PIR48789 Gene

Subcategory (RNA class) for PIR48789 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48789 Gene

No Aliases found

ORGUL Members for PIR48789 Gene

Previous GeneCards Identifiers for PIR48789 Gene

  • GC01P155622

No data available for External Ids for PIR48789 Gene

Summaries for PIR48789 Gene

GeneCards Summary for PIR48789 Gene

PIR48789 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48789 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48789 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48789 Gene

Genomics for PIR48789 Gene

GeneHancer (GH) Regulatory Elements for PIR48789 Gene

Promoters and enhancers for PIR48789 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J155650 Enhancer 1.3 FANTOM5 Ensembl ENCODE 650.7 -1.0 -1015 2.3 CLOCK NFIB INSM2 SIN3A BMI1 ZNF335 ZNF366 FOS DEK SP3 LOC100419799 PIR48789 SCAMP3 FAM189B ASH1L RUSC1 RUSC1-AS1 MIR555 DAP3 ENSG00000246203
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48789 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48789 Gene

Genomic Locations for PIR48789 Gene
chr1:155,652,610-155,652,636
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr1:155,622,401-155,622,427
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR48789 Gene

Genes around PIR48789 on UCSC Golden Path with GeneCards custom track

PIR48789 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48789 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48789 Gene

Function for PIR48789 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48789 Gene

Localization for PIR48789 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48789 Gene

Pathways & Interactions for PIR48789 Gene

SuperPathways for PIR48789 Gene

No Data Available

Interacting Proteins for PIR48789 Gene

Gene Ontology (GO) - Biological Process for PIR48789 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48789 Gene

Drugs & Compounds for PIR48789 Gene

No Compound Related Data Available

Transcripts for PIR48789 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48789 Gene

No ASD Table

Relevant External Links for PIR48789 Gene

GeneLoc Exon Structure for
PIR48789

No data available for mRNA/cDNA for PIR48789 Gene

Expression for PIR48789 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48789 Gene

Orthologs for PIR48789 Gene

No data available for Orthologs and Evolution for PIR48789 Gene

Paralogs for PIR48789 Gene

No data available for Paralogs for PIR48789 Gene

Variants for PIR48789 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48789 Gene

Disorders for PIR48789 Gene

No disorders were found for PIR48789 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48789 Gene

Publications for PIR48789 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48789 Gene

Sources for PIR48789 Gene

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