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Aliases for PIR48786 Gene

Subcategory (RNA class) for PIR48786 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR48786 Gene

No Aliases found

ORGUL Members for PIR48786 Gene

Previous GeneCards Identifiers for PIR48786 Gene

  • GC18M077679

No data available for External Ids for PIR48786 Gene

Summaries for PIR48786 Gene

GeneCards Summary for PIR48786 Gene

PIR48786 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48786 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48786 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48786 Gene

Genomics for PIR48786 Gene

GeneHancer (GH) Regulatory Elements for PIR48786 Gene

Promoters and enhancers for PIR48786 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J079949 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.3 -31.6 -31574 3.9 FOXA2 ATF1 RB1 ARID4B SIN3A ZBTB40 KLF5 BRCA1 ZNF48 ZNF335 PQLC1 RBFADN TXNL4A HSBP1L1 RBFA GC18M079920 PIR48786
GH18J079934 Enhancer 1.2 ENCODE dbSUPER 0.4 -15.4 -15396 1.2 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 NFKBIZ RXRA RBFADN ENSG00000267251 GC18M079920 PIR48786 PQLC1
GH18J079933 Enhancer 0.8 ENCODE 0.4 -14.6 -14586 0.2 ELF3 ARID4B RAD21 RARA SLC30A9 ZNF143 THAP11 ELF1 MIER3 ETV4 GC18M079920 PIR48786 PQLC1
GH18J079936 Enhancer 0.8 dbSUPER 0.4 -17.7 -17746 0.7 ELF3 FOXA2 SAP130 MLX ARID4B MAX CEBPG RBPJ RAD21 RARA RBFADN PQLC1 GC18M079920 PIR48786
GH18J079950 Enhancer 1 ENCODE dbSUPER 0.3 -28.8 -28816 0.2 ELF3 FOXA2 MLX ZNF48 RAD21 RARA YY1 EGR1 MIXL1 RXRA PQLC1 GC18M079920 PIR48786
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48786 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48786 Gene

Genomic Locations for PIR48786 Gene
chr18:79,919,349-79,919,380
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand
chr18:77,679,349-77,679,380
(GRCh37/hg19)
Size:
32 bases
Orientation:
Minus strand

Genomic View for PIR48786 Gene

Genes around PIR48786 on UCSC Golden Path with GeneCards custom track

PIR48786 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48786 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48786 Gene

ORGUL Member Location for PIR48786 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48786 Gene

Function for PIR48786 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48786 Gene

Localization for PIR48786 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48786 Gene

Pathways & Interactions for PIR48786 Gene

SuperPathways for PIR48786 Gene

No Data Available

Interacting Proteins for PIR48786 Gene

Gene Ontology (GO) - Biological Process for PIR48786 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48786 Gene

Drugs & Compounds for PIR48786 Gene

No Compound Related Data Available

Transcripts for PIR48786 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48786 Gene

No ASD Table

Relevant External Links for PIR48786 Gene

GeneLoc Exon Structure for
PIR48786

No data available for mRNA/cDNA for PIR48786 Gene

Expression for PIR48786 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48786 Gene

Orthologs for PIR48786 Gene

No data available for Orthologs and Evolution for PIR48786 Gene

Paralogs for PIR48786 Gene

No data available for Paralogs for PIR48786 Gene

Variants for PIR48786 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48786 Gene

Disorders for PIR48786 Gene

No disorders were found for PIR48786 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48786 Gene

Publications for PIR48786 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48786 Gene

Sources for PIR48786 Gene

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