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Aliases for PIR48785 Gene

Subcategory (RNA class) for PIR48785 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR48785 Gene

No Aliases found

ORGUL Members for PIR48785 Gene

Previous GeneCards Identifiers for PIR48785 Gene

  • GC15M078290

No data available for External Ids for PIR48785 Gene

Summaries for PIR48785 Gene

GeneCards Summary for PIR48785 Gene

PIR48785 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48785 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48785

Additional gene information for PIR48785 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48785 Gene

Genomics for PIR48785 Gene

GeneHancer (GH) Regulatory Elements for PIR48785 Gene

Promoters and enhancers for PIR48785 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J077989 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +3.9 3886 8.3 HDGF PKNOX1 NFIB KLF17 SIN3A BATF ZNF2 ZBTB7B RAD21 RFX5 ENSG00000259792 GC15M078004 LOC91450 PIR52128 LOC645752 ADAMTS7P3 TBC1D2B PEAK1 GC15M078001 GC15M078002
GH15J078000 Enhancer 1 ENCODE dbSUPER 0.7 -2.5 -2517 0.2 ARID4B KLF17 SIN3A KLF14 ZNF2 ZNF48 RAD21 SCRT2 ZNF143 KLF13 GC15M078002 PIR48785 GC15M078014 PIR35295 TBC1D2B
GH15J078002 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -6.4 -6366 3.5 PKNOX1 FOXA2 RAD21 YY1 ZNF335 EGR1 SCRT2 ATF7 IKZF2 CREM LOC645752 ADAMTS7P3 LOC440292 GC15M078002 GC15M078014 PIR35295 PIR48785 TBC1D2B
GH15J078010 Enhancer 1.1 ENCODE dbSUPER 0.4 -14.8 -14797 3.2 ELF3 FOXA2 ARID4B RAD21 RFX5 RARA YY1 EGR1 THAP11 MIXL1 GC15M078014 PIR35295 TBC1D2B LOC645752 SH2D7 ENSG00000199633 GC15M078002 PIR48785
GH15J078006 Enhancer 0.8 ENCODE dbSUPER 0.4 -10.0 -10015 2.9 RXRA NFIB MAX RAD21 SP1 JUND NFIC EGR1 FOS HNF4A TBC1D2B SH2D7 ENSG00000199633 GC15M078014 PIR35295 GC15M078002 PIR48785
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48785 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48785 Gene

Genomic Locations for PIR48785 Gene
chr15:77,997,727-77,997,757
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr15:78,290,069-78,290,099
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR48785 Gene

Genes around PIR48785 on UCSC Golden Path with GeneCards custom track

PIR48785 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48785 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48785 Gene

ORGUL Member Location for PIR48785 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48785 Gene

Function for PIR48785 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48785 Gene

Localization for PIR48785 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48785 Gene

Pathways & Interactions for PIR48785 Gene

SuperPathways for PIR48785 Gene

No Data Available

Interacting Proteins for PIR48785 Gene

Gene Ontology (GO) - Biological Process for PIR48785 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48785 Gene

Drugs & Compounds for PIR48785 Gene

No Compound Related Data Available

Transcripts for PIR48785 Gene

fRNAdb Secondary structures for PIR48785 Gene

  • FR331190

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48785 Gene

No ASD Table

Relevant External Links for PIR48785 Gene

GeneLoc Exon Structure for
PIR48785

No data available for mRNA/cDNA for PIR48785 Gene

Expression for PIR48785 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48785 Gene

Orthologs for PIR48785 Gene

No data available for Orthologs and Evolution for PIR48785 Gene

Paralogs for PIR48785 Gene

No data available for Paralogs for PIR48785 Gene

Variants for PIR48785 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48785 Gene

Disorders for PIR48785 Gene

No disorders were found for PIR48785 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48785 Gene

Publications for PIR48785 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48785 Gene

Sources for PIR48785 Gene

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