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Aliases for PIR48772 Gene

Subcategory (RNA class) for PIR48772 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48772 Gene

No Aliases found

ORGUL Members for PIR48772 Gene

Previous GeneCards Identifiers for PIR48772 Gene

  • GC01P117500

No data available for External Ids for PIR48772 Gene

Summaries for PIR48772 Gene

GeneCards Summary for PIR48772 Gene

PIR48772 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48772 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48772 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48772 Gene

Genomics for PIR48772 Gene

GeneHancer (GH) Regulatory Elements for PIR48772 Gene

Promoters and enhancers for PIR48772 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116908 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.2 -47.5 -47535 3.6 HDGF ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF121 ARID2 ATF7 ENSG00000272715 PTGFRN MAN1A2 CD2 PIR48772
GH01J116918 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -37.9 -37949 3.6 ELF3 PKNOX1 FOXA2 NFIB GLI4 RAD21 YY1 ZNF121 GATA2 ZNF416 CD101 PTGFRN PIR48772
GH01J116913 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -42.4 -42445 4.4 SOX13 IRF2 USF1 FOXA2 CEBPG RARA ZNF7 ZFHX2 NR2F6 ZNF600 CD2 CD101 PTGFRN PIR48772
GH01J116954 Enhancer 0.4 ENCODE 0.7 -3.5 -3530 0.9 DPF2 ZKSCAN1 PIR48772 PTGFRN
GH01J116949 Enhancer 0.6 FANTOM5 Ensembl ENCODE 0.4 -7.3 -7318 3 PTGFRN CD101 C1orf137 PIR48772
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48772 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48772 Gene

Genomic Locations for PIR48772 Gene
chr1:116,958,297-116,958,323
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr1:117,500,919-117,500,945
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR48772 Gene

Genes around PIR48772 on UCSC Golden Path with GeneCards custom track

PIR48772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48772 Gene

Function for PIR48772 Gene

Phenotypes From GWAS Catalog for PIR48772 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48772 Gene

Localization for PIR48772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48772 Gene

Pathways & Interactions for PIR48772 Gene

SuperPathways for PIR48772 Gene

No Data Available

Interacting Proteins for PIR48772 Gene

Gene Ontology (GO) - Biological Process for PIR48772 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48772 Gene

Drugs & Compounds for PIR48772 Gene

No Compound Related Data Available

Transcripts for PIR48772 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48772 Gene

No ASD Table

Relevant External Links for PIR48772 Gene

GeneLoc Exon Structure for
PIR48772

No data available for mRNA/cDNA for PIR48772 Gene

Expression for PIR48772 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48772 Gene

Orthologs for PIR48772 Gene

No data available for Orthologs and Evolution for PIR48772 Gene

Paralogs for PIR48772 Gene

No data available for Paralogs for PIR48772 Gene

Variants for PIR48772 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48772 Gene

Disorders for PIR48772 Gene

No disorders were found for PIR48772 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48772 Gene

Publications for PIR48772 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48772 Gene

Sources for PIR48772 Gene

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