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Aliases for PIR48719 Gene

Subcategory (RNA class) for PIR48719 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48719 Gene

No Aliases found

ORGUL Members for PIR48719 Gene

Previous GeneCards Identifiers for PIR48719 Gene

  • GC10M073578

No data available for External Ids for PIR48719 Gene

Summaries for PIR48719 Gene

GeneCards Summary for PIR48719 Gene

PIR48719 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48719 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48719

Additional gene information for PIR48719 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48719 Gene

Genomics for PIR48719 Gene

GeneHancer (GH) Regulatory Elements for PIR48719 Gene

Promoters and enhancers for PIR48719 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I071817 Enhancer 0.7 Ensembl ENCODE dbSUPER 550.8 +0.2 185 3.2 PRDM10 GC10M071820 PIR48719 CDH23 VSIR PSAP ANAPC16 MIR7152
GH10I071835 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.5 -19475 6.3 PKNOX1 ATF1 SMAD1 SIN3A YBX1 ZNF2 IRF4 YY1 GLIS2 ARID2 VSIR ANAPC16 PSAP GC10M071845 GC10M071820 PIR48719
GH10I071821 Enhancer 0.6 ENCODE dbSUPER 0.8 -2.4 -2391 0.9 REST ATF2 VSIR CDH23 GC10M071820 PIR48719 GC10M071845 PSAP
GH10I071805 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +13.0 12971 1.1 HDAC1 HDGF ZSCAN4 FOSL1 CTBP1 GLIS2 MTA3 ZNF316 POLR2A FOXK2 CDH23 PSAP GC10M071820 PIR48719 MIR7152
GH10I071815 Enhancer 0.5 dbSUPER 0.8 +2.9 2948 1.1 POLR2B RFX1 POLR2A ZBTB33 SUPT5H VSIR CDH23 PSAP GC10M071820 PIR48719 MIR7152
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48719 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48719 Gene

Genomic Locations for PIR48719 Gene
chr10:71,819,068-71,819,098
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr10:73,578,825-73,578,855
(GRCh37/hg19)

Genomic View for PIR48719 Gene

Genes around PIR48719 on UCSC Golden Path with GeneCards custom track

PIR48719 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48719 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48719 Gene

ORGUL Member Location for PIR48719 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48719 Gene

Proteins for PIR48719 Gene

Post-translational modifications for PIR48719 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48719 Gene

Domains & Families for PIR48719 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48719 Gene

Function for PIR48719 Gene

Phenotypes From GWAS Catalog for PIR48719 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48719 Gene

Localization for PIR48719 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48719 Gene

Pathways & Interactions for PIR48719 Gene

SuperPathways for PIR48719 Gene

No Data Available

Interacting Proteins for PIR48719 Gene

Gene Ontology (GO) - Biological Process for PIR48719 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48719 Gene

Drugs & Compounds for PIR48719 Gene

No Compound Related Data Available

Transcripts for PIR48719 Gene

fRNAdb Secondary structures for PIR48719 Gene

  • FR006585

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48719 Gene

No ASD Table

Relevant External Links for PIR48719 Gene

GeneLoc Exon Structure for
PIR48719

No data available for mRNA/cDNA for PIR48719 Gene

Expression for PIR48719 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48719 Gene

Orthologs for PIR48719 Gene

No data available for Orthologs and Evolution for PIR48719 Gene

Paralogs for PIR48719 Gene

No data available for Paralogs for PIR48719 Gene

Variants for PIR48719 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48719 Gene

Disorders for PIR48719 Gene

No disorders were found for PIR48719 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48719 Gene

Publications for PIR48719 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48719 Gene

Sources for PIR48719 Gene

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