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Aliases for PIR48652 Gene

Subcategory (RNA class) for PIR48652 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48652 Gene

No Aliases found

ORGUL Members for PIR48652 Gene

Previous GeneCards Identifiers for PIR48652 Gene

  • GC05P052096

No data available for External Ids for PIR48652 Gene

Summaries for PIR48652 Gene

GeneCards Summary for PIR48652 Gene

PIR48652 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48652 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48652 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48652 Gene

Genomics for PIR48652 Gene

GeneHancer (GH) Regulatory Elements for PIR48652 Gene

Promoters and enhancers for PIR48652 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I052797 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 550.8 +1.0 1033 7.9 HDGF CLOCK MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ITGA1 PIR48652 PELO B3GNTL1P1
GH05I052786 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -11.9 -11948 3.5 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 YY1 GLIS2 ZNF143 PELO ITGA1 LOC105378963 PIR48652
GH05I052809 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +10.1 10129 2.8 CTCF JUN MAX CEBPB EP300 NR2F2 JUND ZNF341 FOS NFE2 PELO ITGA1 LOC105378963 PIR48652 B3GNTL1P1
GH05I052840 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +40.2 40192 1.1 CEBPG FEZF1 ZIC2 ZNF335 SCRT2 ATF7 ZNF600 ZBTB20 ZNF10 ATF2 PIR48652 B3GNTL1P1 ITGA1
GH05I052836 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +37.8 37835 3.3 NR2F2 PRDM6 ZSCAN5C ZNF600 HNF4A FOS ZBTB17 SP7 PIR48652 B3GNTL1P1 ITGA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48652 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48652 Gene

Genomic Locations for PIR48652 Gene
chr5:52,800,472-52,800,499
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr5:52,096,306-52,096,333
(GRCh37/hg19)

Genomic View for PIR48652 Gene

Genes around PIR48652 on UCSC Golden Path with GeneCards custom track

PIR48652 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48652 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48652 Gene

Proteins for PIR48652 Gene

Post-translational modifications for PIR48652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48652 Gene

Domains & Families for PIR48652 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48652 Gene

Function for PIR48652 Gene

Phenotypes From GWAS Catalog for PIR48652 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48652 Gene

Localization for PIR48652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48652 Gene

Pathways & Interactions for PIR48652 Gene

SuperPathways for PIR48652 Gene

No Data Available

Interacting Proteins for PIR48652 Gene

Gene Ontology (GO) - Biological Process for PIR48652 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48652 Gene

Drugs & Compounds for PIR48652 Gene

No Compound Related Data Available

Transcripts for PIR48652 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48652 Gene

No ASD Table

Relevant External Links for PIR48652 Gene

GeneLoc Exon Structure for
PIR48652

No data available for mRNA/cDNA for PIR48652 Gene

Expression for PIR48652 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48652 Gene

Orthologs for PIR48652 Gene

No data available for Orthologs and Evolution for PIR48652 Gene

Paralogs for PIR48652 Gene

No data available for Paralogs for PIR48652 Gene

Variants for PIR48652 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48652 Gene

Disorders for PIR48652 Gene

No disorders were found for PIR48652 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48652 Gene

Publications for PIR48652 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48652 Gene

Sources for PIR48652 Gene

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