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Aliases for PIR48648 Gene

Subcategory (RNA class) for PIR48648 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR48648 Gene

No Aliases found

ORGUL Members for PIR48648 Gene

Previous GeneCards Identifiers for PIR48648 Gene

  • GC10M126315

No data available for External Ids for PIR48648 Gene

Summaries for PIR48648 Gene

GeneCards Summary for PIR48648 Gene

PIR48648 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48648 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48648

Additional gene information for PIR48648 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48648 Gene

Genomics for PIR48648 Gene

GeneHancer (GH) Regulatory Elements for PIR48648 Gene

Promoters and enhancers for PIR48648 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J124615 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.1 4073 15.1 HDAC1 PKNOX1 KLF17 SIN3A BATF IRF4 RAD21 ZBTB40 TCF12 GLIS2 FAM53B ENSG00000278831 GC10M124630 GC10M124633 GC10M124640 GC10P124652 PIR39318 PIR55413 PIR31120 PIR41440
GH10J124635 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.3 -12273 7.6 HDGF PKNOX1 RFX5 ZNF766 SCRT2 ATF7 IKZF2 SMARCA5 CEBPB REST FAM53B CHST15 ABRAXAS2 ZRANB1 EEF1AKMT2 GC10M124645 PIR48648 FAM53B-AS1 ENSG00000258539
GH10J124645 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -23.9 -23859 11.3 HDGF MLX ARID4B FEZF1 DMAP1 IRF4 ZNF48 YY1 TCF12 ATF7 FAM53B CHST15 EEF1AKMT2 LHPP ZRANB1 GC10M124645 PIR48648 FAM53B-AS1 ENSG00000258539
GH10J124665 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 0.3 -40.1 -40137 3.3 NCOA3 KLF1 KLF17 SIN3A ZIC2 CTBP1 GATA3 RCOR1 FOS FOSL2 FAM53B EEF1AKMT2 LHPP FAM53B-AS1 PIR48648 GC10M124645 ENSG00000258539
GH10J124670 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -44.9 -44930 4.3 HDAC1 MEIS2 CTCF KLF1 PKNOX1 TEAD4 KLF17 CEBPG ZIC2 FOSL1 FAM53B EEF1AKMT2 LHPP ZRANB1 FAM53B-AS1 PIR48648 GC10M124645 ENSG00000258539
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48648 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48648 Gene

Genomic Locations for PIR48648 Gene
chr10:124,627,227-124,627,259
(GRCh38/hg38)
Size:
33 bases
Orientation:
Minus strand
chr10:126,315,796-126,315,828
(GRCh37/hg19)
Size:
33 bases
Orientation:
Minus strand

Genomic View for PIR48648 Gene

Genes around PIR48648 on UCSC Golden Path with GeneCards custom track

PIR48648 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48648 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48648 Gene

ORGUL Member Location for PIR48648 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48648 Gene

Function for PIR48648 Gene

Phenotypes From GWAS Catalog for PIR48648 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48648 Gene

Localization for PIR48648 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48648 Gene

Pathways & Interactions for PIR48648 Gene

SuperPathways for PIR48648 Gene

No Data Available

Interacting Proteins for PIR48648 Gene

Gene Ontology (GO) - Biological Process for PIR48648 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48648 Gene

Drugs & Compounds for PIR48648 Gene

No Compound Related Data Available

Transcripts for PIR48648 Gene

fRNAdb Secondary structures for PIR48648 Gene

  • FR185362

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48648 Gene

No ASD Table

Relevant External Links for PIR48648 Gene

GeneLoc Exon Structure for
PIR48648

No data available for mRNA/cDNA for PIR48648 Gene

Expression for PIR48648 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48648 Gene

Orthologs for PIR48648 Gene

No data available for Orthologs and Evolution for PIR48648 Gene

Paralogs for PIR48648 Gene

No data available for Paralogs for PIR48648 Gene

Variants for PIR48648 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48648 Gene

Disorders for PIR48648 Gene

No disorders were found for PIR48648 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48648 Gene

Publications for PIR48648 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48648 Gene

Sources for PIR48648 Gene

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