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Aliases for PIR48629 Gene

Subcategory (RNA class) for PIR48629 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48629 Gene

No Aliases found

ORGUL Members for PIR48629 Gene

Previous GeneCards Identifiers for PIR48629 Gene

  • GC11M005957

No data available for External Ids for PIR48629 Gene

Summaries for PIR48629 Gene

GeneCards Summary for PIR48629 Gene

PIR48629 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48629 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48629 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48629 Gene

Genomics for PIR48629 Gene

GeneHancer (GH) Regulatory Elements for PIR48629 Gene

Promoters and enhancers for PIR48629 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J011857 Promoter/Enhancer 1.1 Ensembl ENCODE 0.3 +36.0 36039 1.6 SP1 CC2D1A ZBTB33 ZNF316 SP2 HDGF NFYB YY1 IRF2 HNF4A ENSG00000255492 USP47 PIR48629
GH11J011859 Enhancer 1 Ensembl ENCODE 0.3 +30.8 30788 7.4 CBFA2T2 MLLT1 MAFK SP7 TRIM24 ZNF680 SMARCA4 IKZF1 ZBTB33 DPF2 USP47 ENSG00000255492 PIR48629
GH11J011878 Enhancer 0.7 FANTOM5 Ensembl 0.4 +16.1 16089 0.8 ZSCAN4 ZNF316 NFE2 ZBTB33 DACH1 USP47 PIR48629 ENSG00000255492
GH11J011871 Enhancer 0.8 Ensembl ENCODE 0.3 +23.3 23288 6.8 PRDM1 RFX1 ZIC2 HDAC1 ZNF316 ZBTB48 ZBTB17 POLR2A ZNF530 ZNF18 USP47 ENSG00000255492 PIR48629
GH11J011875 Enhancer 0.5 Ensembl 0.4 +18.1 18136 1.5 MZF1 CTCF RAD21 ZBTB12 USP47 PIR48629 ENSG00000255492
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48629 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48629 Gene

Genomic Locations for PIR48629 Gene
chr11:11,894,263-11,894,289
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr11:5,957,905-5,957,931
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR48629 Gene

Genes around PIR48629 on UCSC Golden Path with GeneCards custom track

PIR48629 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48629 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48629 Gene

Proteins for PIR48629 Gene

Post-translational modifications for PIR48629 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48629 Gene

Domains & Families for PIR48629 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48629 Gene

Function for PIR48629 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48629 Gene

Localization for PIR48629 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48629 Gene

Pathways & Interactions for PIR48629 Gene

PathCards logo

SuperPathways for PIR48629 Gene

No Data Available

Interacting Proteins for PIR48629 Gene

Gene Ontology (GO) - Biological Process for PIR48629 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48629 Gene

Drugs & Compounds for PIR48629 Gene

No Compound Related Data Available

Transcripts for PIR48629 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48629 Gene

No ASD Table

Relevant External Links for PIR48629 Gene

GeneLoc Exon Structure for
PIR48629

No data available for mRNA/cDNA for PIR48629 Gene

Expression for PIR48629 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48629 Gene

Orthologs for PIR48629 Gene

No data available for Orthologs and Evolution for PIR48629 Gene

Paralogs for PIR48629 Gene

No data available for Paralogs for PIR48629 Gene

Variants for PIR48629 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48629 Gene

Disorders for PIR48629 Gene

No disorders were found for PIR48629 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48629 Gene

Publications for PIR48629 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR48629 Gene

Products for PIR48629 Gene

Sources for PIR48629 Gene

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