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Aliases for PIR48625 Gene

Subcategory (RNA class) for PIR48625 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48625 Gene

No Aliases found

ORGUL Members for PIR48625 Gene

Previous GeneCards Identifiers for PIR48625 Gene

  • GC01M031410
  • GC01M031411
  • GC01M031414
  • GC01M031417
  • GC01M030936
  • GC01M030937
  • GC01M030938
  • GC01M030939
  • GC01M030940
  • GC01M030941
  • GC01M030942

No data available for External Ids for PIR48625 Gene

Summaries for PIR48625 Gene

GeneCards Summary for PIR48625 Gene

PIR48625 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48625 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48625

Additional gene information for PIR48625 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48625 Gene

Genomics for PIR48625 Gene

GeneHancer (GH) Regulatory Elements for PIR48625 Gene

Promoters and enhancers for PIR48625 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I030933 Enhancer 0.6 ENCODE 550.8 +1.3 1322 2 PAF1 SCRT1 ZNF449 ZSCAN4 FEZF1 PRDM6 POLR2A PATZ1 SCRT2 PRDM10 GC01M030944 GC01M030947 GC01M030948 PIR48625 SNORD103A RN7SL371P PUM1
GH01I030929 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +6.3 6331 0.7 HDGF PKNOX1 RB1 ZNF2 RAD21 RARA ARID2 SCRT2 ZNF143 ATF7 MATN1 MATN1-AS1 PIR48625 GC01M030947 GC01M030944 RN7SL371P
GH01I030918 Enhancer 1.2 Ensembl ENCODE 0.4 +16.3 16250 1.6 HDGF PKNOX1 ARNT ZNF766 E2F8 FOS KLF13 ZNF662 ZNF592 MEF2D RN7SL371P ENSG00000229447 PUM1 LOC400748 SNRNP40 MATN1 MATN1-AS1 ADGRB2 GC01M030944 GC01M030947
GH01I030932 Enhancer 0.4 UCNEbase 0.8 +3.5 3484 0.2 PUM1 LOC400748 GC01M030944 GC01M030947 PIR48625 RN7SL371P
GH01I030931 Enhancer 0.4 UCNEbase 0.8 +4.2 4163 0.2 PUM1 LOC400748 GC01M030944 GC01M030947 PIR48625 RN7SL371P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48625 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48625 Gene

Genomic Locations for PIR48625 Gene
chr1:30,935,741-30,935,771
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr1:31,408,588-31,408,618
(GRCh37/hg19)

Genomic View for PIR48625 Gene

Genes around PIR48625 on UCSC Golden Path with GeneCards custom track

PIR48625 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48625 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48625 Gene

ORGUL Member Location for PIR48625 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48625 Gene

Proteins for PIR48625 Gene

Post-translational modifications for PIR48625 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48625 Gene

Domains & Families for PIR48625 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48625 Gene

Function for PIR48625 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48625 Gene

Localization for PIR48625 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48625 Gene

Pathways & Interactions for PIR48625 Gene

SuperPathways for PIR48625 Gene

No Data Available

Interacting Proteins for PIR48625 Gene

Gene Ontology (GO) - Biological Process for PIR48625 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48625 Gene

Drugs & Compounds for PIR48625 Gene

No Compound Related Data Available

Transcripts for PIR48625 Gene

fRNAdb Secondary structures for PIR48625 Gene

  • FR259362

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48625 Gene

No ASD Table

Relevant External Links for PIR48625 Gene

GeneLoc Exon Structure for
PIR48625

No data available for mRNA/cDNA for PIR48625 Gene

Expression for PIR48625 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48625 Gene

Orthologs for PIR48625 Gene

No data available for Orthologs and Evolution for PIR48625 Gene

Paralogs for PIR48625 Gene

No data available for Paralogs for PIR48625 Gene

Variants for PIR48625 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48625 Gene

Disorders for PIR48625 Gene

No disorders were found for PIR48625 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48625 Gene

Publications for PIR48625 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48625 Gene

Sources for PIR48625 Gene

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