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Aliases for PIR48624 Gene

Subcategory (RNA class) for PIR48624 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48624 Gene

No Aliases found

ORGUL Members for PIR48624 Gene

Previous GeneCards Identifiers for PIR48624 Gene

  • GC05M177938

No data available for External Ids for PIR48624 Gene

Summaries for PIR48624 Gene

GeneCards Summary for PIR48624 Gene

PIR48624 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48624 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48624 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48624 Gene

Genomics for PIR48624 Gene

GeneHancer (GH) Regulatory Elements for PIR48624 Gene

Promoters and enhancers for PIR48624 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I178483 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +28.1 28069 1.1 L3MBTL2 POLR2A MAX MYC MGA YY1 GABPA COL23A1 CLK4 PHYKPL LOC105377756 PIR48624
GH05I178496 Enhancer 0.6 Ensembl ENCODE 0.4 +15.0 15017 1.2 POLR2A JUN ENSG00000253698 COL23A1 PIR48624 LOC105377756
GH05I178535 Enhancer 0.8 Ensembl dbSUPER 0.3 -23.6 -23578 0.2 EGR1 POLR2A NRF1 MAX CBFA2T3 CBFA2T2 MYC MGA PIR48624 COL23A1
GH05I178486 Enhancer 0.7 FANTOM5 Ensembl 0.3 +25.3 25322 0.8 ZNF10 MAX MYC COL23A1 LOC105377756 PIR48624
GH05I178555 Enhancer 0.7 ENCODE 0.3 -43.9 -43850 1.2 ATF1 TEAD4 TAL1 MAX SIN3A RELA ETS1 TCF12 MTA3 ZNF316 COL23A1 PIR48624
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48624 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48624 Gene

Genomic Locations for PIR48624 Gene
chr5:178,511,896-178,511,923
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr5:177,938,897-177,938,924
(GRCh37/hg19)

Genomic View for PIR48624 Gene

Genes around PIR48624 on UCSC Golden Path with GeneCards custom track

PIR48624 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48624 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48624 Gene

Proteins for PIR48624 Gene

Post-translational modifications for PIR48624 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48624 Gene

Domains & Families for PIR48624 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48624 Gene

Function for PIR48624 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48624 Gene

Localization for PIR48624 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48624 Gene

Pathways & Interactions for PIR48624 Gene

SuperPathways for PIR48624 Gene

No Data Available

Interacting Proteins for PIR48624 Gene

Gene Ontology (GO) - Biological Process for PIR48624 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48624 Gene

Drugs & Compounds for PIR48624 Gene

No Compound Related Data Available

Transcripts for PIR48624 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48624 Gene

No ASD Table

Relevant External Links for PIR48624 Gene

GeneLoc Exon Structure for
PIR48624

No data available for mRNA/cDNA for PIR48624 Gene

Expression for PIR48624 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48624 Gene

Orthologs for PIR48624 Gene

No data available for Orthologs and Evolution for PIR48624 Gene

Paralogs for PIR48624 Gene

No data available for Paralogs for PIR48624 Gene

Variants for PIR48624 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48624 Gene

Disorders for PIR48624 Gene

No disorders were found for PIR48624 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48624 Gene

Publications for PIR48624 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48624 Gene

Sources for PIR48624 Gene

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