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Aliases for PIR48619 Gene

Subcategory (RNA class) for PIR48619 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48619 Gene

No Aliases found

ORGUL Members for PIR48619 Gene

Previous GeneCards Identifiers for PIR48619 Gene

  • GC19P019583
  • GC19P019474
  • GC19P019477
  • GC19P019652

No data available for External Ids for PIR48619 Gene

Summaries for PIR48619 Gene

GeneCards Summary for PIR48619 Gene

PIR48619 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48619 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48619 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48619 Gene

Genomics for PIR48619 Gene

GeneHancer (GH) Regulatory Elements for PIR48619 Gene

Promoters and enhancers for PIR48619 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I019470 Enhancer 0.7 Ensembl dbSUPER 550.8 -1.8 -1812 1 NFE2 EBF1 HNF4A RUNX3 PIR48619 GC19P019843 GATAD2A
GH19I019473 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +2.2 2158 4.2 CTCF BACH1 EBF1 FEZF1 BATF IRF4 RAD21 ZNF316 POLR2A SCRT2 NDUFA13 GATAD2A TM6SF2 PIR48619 GC19M019490
GH19I019484 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.9 14864 6.3 PKNOX1 ARNT ARID4B SIN3A ZBTB7B IRF4 YY1 ZNF766 ZNF143 FOS GATAD2A NR2C2AP ZNF90 ENSG00000268030 TMEM161A ATP13A1 ENSG00000267481 YJEFN3 TM6SF2 RFXANK
GH19I019477 Enhancer 0.8 ENCODE dbSUPER 0.8 +4.8 4802 0.8 ZNF217 KLF1 FOXA2 CEBPG KLF4 ATF2 YY1 FOXA1 GATAD2A PIR48619 GC19M019490
GH19I019456 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.8 -11847 9.5 HDGF PKNOX1 SIN3A IRF4 GLIS2 ZNF143 KLF7 FOS SP5 JUNB GATAD2A NDUFA13 GMIP MIR640 MAU2 TM6SF2 RFXANK PBX4 ZNF14 ZNF506
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48619 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48619 Gene

Genomic Locations for PIR48619 Gene
chr19:19,473,112-19,473,138
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr19:19,583,921-19,583,947
(GRCh37/hg19)

Genomic View for PIR48619 Gene

Genes around PIR48619 on UCSC Golden Path with GeneCards custom track

PIR48619 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48619 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48619 Gene

Proteins for PIR48619 Gene

Post-translational modifications for PIR48619 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48619 Gene

Domains & Families for PIR48619 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48619 Gene

Function for PIR48619 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48619 Gene

Localization for PIR48619 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48619 Gene

Pathways & Interactions for PIR48619 Gene

SuperPathways for PIR48619 Gene

No Data Available

Interacting Proteins for PIR48619 Gene

Gene Ontology (GO) - Biological Process for PIR48619 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48619 Gene

Drugs & Compounds for PIR48619 Gene

No Compound Related Data Available

Transcripts for PIR48619 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48619 Gene

No ASD Table

Relevant External Links for PIR48619 Gene

GeneLoc Exon Structure for
PIR48619

No data available for mRNA/cDNA for PIR48619 Gene

Expression for PIR48619 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48619 Gene

Orthologs for PIR48619 Gene

No data available for Orthologs and Evolution for PIR48619 Gene

Paralogs for PIR48619 Gene

No data available for Paralogs for PIR48619 Gene

Variants for PIR48619 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48619 Gene

Disorders for PIR48619 Gene

No disorders were found for PIR48619 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48619 Gene

Publications for PIR48619 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48619 Gene

Sources for PIR48619 Gene

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