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Aliases for PIR48609 Gene

Subcategory (RNA class) for PIR48609 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48609 Gene

No Aliases found

ORGUL Members for PIR48609 Gene

Previous GeneCards Identifiers for PIR48609 Gene

  • GC20P030824
  • GC20P032238
  • GC20P032241
  • GC20P032242
  • GC20P032243
  • GC20P032245
  • GC20P032247

No data available for External Ids for PIR48609 Gene

Summaries for PIR48609 Gene

GeneCards Summary for PIR48609 Gene

PIR48609 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48609 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48609 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48609 Gene

Genomics for PIR48609 Gene

GeneHancer (GH) Regulatory Elements for PIR48609 Gene

Promoters and enhancers for PIR48609 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J032235 Enhancer 1 ENCODE dbSUPER 650.7 +0.5 544 1.4 ELF3 FOXA2 ARID4B THRB ZNF48 RAD21 RARA SLC30A9 CREM MIXL1 MIR1825 PIR48609 PIR35343 POFUT1
GH20J032234 Enhancer 0.4 Ensembl dbSUPER 650.7 -1.1 -1057 0.6 PIR48609 PIR35343 POFUT1
GH20J032236 Enhancer 0.4 dbSUPER 650.7 +1.6 1581 0.6 ZNF664 POLR2A ZIC2 MIR1825 PIR48609 PIR35343 POFUT1
GH20J032232 Enhancer 0.8 ENCODE dbSUPER 0.7 -2.7 -2749 2.4 MAFG ZMYM3 EBF1 ZKSCAN1 RELA ZNF664 MAFF ZNF316 NFATC1 RUNX3 POFUT1 TSPY26P PIR48609
GH20J032226 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -7.5 -7539 2.8 PKNOX1 FEZF1 ZNF335 SCRT2 RXRA ZBTB11 CEBPB ZNF398 ZEB2 ZNF488 TSPY26P POFUT1 PIR48609
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48609 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48609 Gene

Genomic Locations for PIR48609 Gene
chr20:32,235,358-32,235,385
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr20:30,823,161-30,823,188
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48609 Gene

Genes around PIR48609 on UCSC Golden Path with GeneCards custom track

PIR48609 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48609 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48609 Gene

Function for PIR48609 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48609 Gene

Localization for PIR48609 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48609 Gene

Pathways & Interactions for PIR48609 Gene

SuperPathways for PIR48609 Gene

No Data Available

Interacting Proteins for PIR48609 Gene

Gene Ontology (GO) - Biological Process for PIR48609 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48609 Gene

Drugs & Compounds for PIR48609 Gene

No Compound Related Data Available

Transcripts for PIR48609 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48609 Gene

No ASD Table

Relevant External Links for PIR48609 Gene

GeneLoc Exon Structure for
PIR48609

No data available for mRNA/cDNA for PIR48609 Gene

Expression for PIR48609 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48609 Gene

Orthologs for PIR48609 Gene

No data available for Orthologs and Evolution for PIR48609 Gene

Paralogs for PIR48609 Gene

No data available for Paralogs for PIR48609 Gene

Variants for PIR48609 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48609 Gene

Disorders for PIR48609 Gene

No disorders were found for PIR48609 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48609 Gene

Publications for PIR48609 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48609 Gene

Sources for PIR48609 Gene

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