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Aliases for PIR48599 Gene

Subcategory (RNA class) for PIR48599 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48599 Gene

No Aliases found

ORGUL Members for PIR48599 Gene

Previous GeneCards Identifiers for PIR48599 Gene

  • GC11M111591

No data available for External Ids for PIR48599 Gene

Summaries for PIR48599 Gene

GeneCards Summary for PIR48599 Gene

PIR48599 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48599 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48599 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48599 Gene

Genomics for PIR48599 Gene

GeneHancer (GH) Regulatory Elements for PIR48599 Gene

Promoters and enhancers for PIR48599 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J111719 Enhancer 0.4 ENCODE dbSUPER 650.7 +0.8 818 0.4 PIR48599 RN7SKP273 PPP2R1B SIK2
GH11J111721 Enhancer 0.2 dbSUPER 650.7 -1.8 -1764 1.8 GC11P111753 PIR48599 PIR51181 PIR43429 PPP2R1B SIK2
GH11J111718 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +2.2 2202 1.2 JUND ZFP3 ZBTB11 ZNF10 ZNF341 FOSL2 ZNF600 PRDM1 PIR48599 RN7SKP273 PPP2R1B SIK2
GH11J111697 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +22.1 22059 2.6 ATF1 PKNOX1 ARNT NCOA2 CHAMP1 TCF12 SMARCA5 GATAD2B ZEB2 ZNF592 PPP2R1B NKAPD1 BTG4 C11orf88 MIR34B MIR34C SIK2 RN7SKP273 PIR48599
GH11J111706 Enhancer 0.9 ENCODE dbSUPER 0.4 +13.5 13502 1.4 SOX13 FOXA2 MAX CEBPG FEZF1 RAD21 YY1 TCF7L2 RXRA HLF PPP2R1B SIK2 BTG4 C11orf88 MIR34B MIR34C PIR48599 RN7SKP273
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48599 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48599 Gene

Genomic Locations for PIR48599 Gene
chr11:111,720,794-111,720,821
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr11:111,591,518-111,591,545
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR48599 Gene

Genes around PIR48599 on UCSC Golden Path with GeneCards custom track

PIR48599 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48599 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48599 Gene

Function for PIR48599 Gene

Phenotypes From GWAS Catalog for PIR48599 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48599 Gene

Localization for PIR48599 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48599 Gene

Pathways & Interactions for PIR48599 Gene

SuperPathways for PIR48599 Gene

No Data Available

Interacting Proteins for PIR48599 Gene

Gene Ontology (GO) - Biological Process for PIR48599 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48599 Gene

Drugs & Compounds for PIR48599 Gene

No Compound Related Data Available

Transcripts for PIR48599 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48599 Gene

No ASD Table

Relevant External Links for PIR48599 Gene

GeneLoc Exon Structure for
PIR48599

No data available for mRNA/cDNA for PIR48599 Gene

Expression for PIR48599 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48599 Gene

Orthologs for PIR48599 Gene

No data available for Orthologs and Evolution for PIR48599 Gene

Paralogs for PIR48599 Gene

No data available for Paralogs for PIR48599 Gene

Variants for PIR48599 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48599 Gene

Disorders for PIR48599 Gene

No disorders were found for PIR48599 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48599 Gene

Publications for PIR48599 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48599 Gene

Sources for PIR48599 Gene

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