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Aliases for PIR48588 Gene

Subcategory (RNA class) for PIR48588 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48588 Gene

No Aliases found

ORGUL Members for PIR48588 Gene

Previous GeneCards Identifiers for PIR48588 Gene

  • GC01P052675

No data available for External Ids for PIR48588 Gene

Summaries for PIR48588 Gene

GeneCards Summary for PIR48588 Gene

PIR48588 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48588 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48588 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48588 Gene

Genomics for PIR48588 Gene

GeneHancer (GH) Regulatory Elements for PIR48588 Gene

Promoters and enhancers for PIR48588 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J052208 Enhancer 0.2 ENCODE 650.7 +0.5 538 3 PIR48588 CC2D1B RAB3B GC01P052251 ZFYVE9
GH01J052216 Promoter 0.6 EPDnew 0.4 +6.9 6863 0.1 BACH1 ZFYVE9 PIR48588 GC01P052251
GH01J052237 Enhancer 0.6 ENCODE 0.3 +29.0 29041 1.9 SMARCE1 JUN BACH1 CEBPG FOSL1 JUND IKZF1 NBN HMBOX1 NFE2 CC2D1B ZFYVE9 GC01P052251 PIR48588
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48588 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48588 Gene

Genomic Locations for PIR48588 Gene
chr1:52,209,516-52,209,543
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr1:52,675,188-52,675,215
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48588 Gene

Genes around PIR48588 on UCSC Golden Path with GeneCards custom track

PIR48588 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48588 Gene

Function for PIR48588 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48588 Gene

Localization for PIR48588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48588 Gene

Pathways & Interactions for PIR48588 Gene

SuperPathways for PIR48588 Gene

No Data Available

Interacting Proteins for PIR48588 Gene

Gene Ontology (GO) - Biological Process for PIR48588 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48588 Gene

Drugs & Compounds for PIR48588 Gene

No Compound Related Data Available

Transcripts for PIR48588 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48588 Gene

No ASD Table

Relevant External Links for PIR48588 Gene

GeneLoc Exon Structure for
PIR48588

No data available for mRNA/cDNA for PIR48588 Gene

Expression for PIR48588 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48588 Gene

Orthologs for PIR48588 Gene

No data available for Orthologs and Evolution for PIR48588 Gene

Paralogs for PIR48588 Gene

No data available for Paralogs for PIR48588 Gene

Variants for PIR48588 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48588 Gene

Disorders for PIR48588 Gene

No disorders were found for PIR48588 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48588 Gene

Publications for PIR48588 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48588 Gene

Sources for PIR48588 Gene

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