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Aliases for PIR48578 Gene

Subcategory (RNA class) for PIR48578 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48578 Gene

No Aliases found

ORGUL Members for PIR48578 Gene

Previous GeneCards Identifiers for PIR48578 Gene

  • GC15M099678
  • GC15M099681
  • GC15M099685
  • GC15M099687
  • GC15M099692
  • GC15M099138
  • GC15M099141
  • GC15M099143
  • GC15M099145
  • GC15M099147
  • GC15M099149
  • GC15M099151
  • GC15M099153

No data available for External Ids for PIR48578 Gene

Summaries for PIR48578 Gene

GeneCards Summary for PIR48578 Gene

PIR48578 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48578 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48578 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48578 Gene

Genomics for PIR48578 Gene

GeneHancer (GH) Regulatory Elements for PIR48578 Gene

Promoters and enhancers for PIR48578 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J099135 Enhancer 0.8 ENCODE dbSUPER 650.7 +1.9 1920 0.1 SOX5 PKNOX1 ESRRA JUNB BATF ATF2 FOXA1 OSR2 ZSCAN21 PRDM6 GC15P099140 GC15M099359 PIR39368 PIR56068 PIR48578 PIR34769 PIR35830 PIR60853 PIR45926 SYNM
GH15J099137 Enhancer 0.5 dbSUPER 650.7 +1.3 1314 0.5 OSR2 PRDM6 IKZF1 ATF7 ATF2 IKZF2 FOXA1 GC15P099140 GC15M099359 PIR39368 PIR56068 PIR48578 PIR34769 PIR35830 PIR60853 PIR45926 ENSG00000261616
GH15J099136 Enhancer 0.3 dbSUPER 650.7 +0.2 237 1.6 ZIC2 GC15P099140 GC15M099359 PIR56068 PIR48578 PIR34769 PIR60853 ENSG00000261616 ENSG00000261054 SYNM LRRC28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48578 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48578 Gene

Genomic Locations for PIR48578 Gene
chr15:99,137,175-99,137,201
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr15:99,677,380-99,677,406
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR48578 Gene

Genes around PIR48578 on UCSC Golden Path with GeneCards custom track

PIR48578 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48578 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48578 Gene

Function for PIR48578 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48578 Gene

Localization for PIR48578 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48578 Gene

Pathways & Interactions for PIR48578 Gene

SuperPathways for PIR48578 Gene

No Data Available

Interacting Proteins for PIR48578 Gene

Gene Ontology (GO) - Biological Process for PIR48578 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48578 Gene

Drugs & Compounds for PIR48578 Gene

No Compound Related Data Available

Transcripts for PIR48578 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48578 Gene

No ASD Table

Relevant External Links for PIR48578 Gene

GeneLoc Exon Structure for
PIR48578

No data available for mRNA/cDNA for PIR48578 Gene

Expression for PIR48578 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48578 Gene

Orthologs for PIR48578 Gene

No data available for Orthologs and Evolution for PIR48578 Gene

Paralogs for PIR48578 Gene

No data available for Paralogs for PIR48578 Gene

Variants for PIR48578 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48578 Gene

Disorders for PIR48578 Gene

No disorders were found for PIR48578 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48578 Gene

Publications for PIR48578 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48578 Gene

Sources for PIR48578 Gene

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