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Aliases for PIR48574 Gene

Subcategory (RNA class) for PIR48574 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48574 Gene

No Aliases found

ORGUL Members for PIR48574 Gene

No data available for External Ids for PIR48574 Gene

Summaries for PIR48574 Gene

GeneCards Summary for PIR48574 Gene

PIR48574 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48574 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48574 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48574 Gene

Genomics for PIR48574 Gene

GeneHancer (GH) Regulatory Elements for PIR48574 Gene

Promoters and enhancers for PIR48574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I085528 Enhancer 1.1 ENCODE dbSUPER 550.8 +1.0 966 0.5 HDGF ATF1 YBX1 ZNF48 ZNF766 ATF7 REST ZNF592 MBD2 GMEB1 PIR48574 ENSG00000270184 RNU1-103P ZDHHC7 KLHL36 RN7SL381P ENSG00000260859 CRISPLD2 TLDC1 ENSG00000278716
GH16I085530 Enhancer 0.3 dbSUPER 550.8 -1.5 -1527 1.4 NR2F2 PIR48574 GC16P085552 GSE1
GH16I085534 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.3 -6321 3.4 HDGF HNRNPUL1 PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 ZDHHC7 KLHL36 ENSG00000270184 CRISPLD2 RNU1-103P ENSG00000260859 GSE1 GINS2 EMC8 PIR48574
GH16I085512 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.1 15096 4 HDGF PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 ENSG00000270184 RN7SL381P KLHL36 ZDHHC7 RNU1-103P PIR48574 ENSG00000278716 GSE1
GH16I085518 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.2 7215 8.2 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 ZNF548 NFYC SSRP1 ENSG00000270184 KLHL36 RNU1-103P RN7SL381P ZDHHC7 CRISPLD2 GSE1 TLDC1 ENSG00000260859 EMC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48574 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48574 Gene

Genomic Locations for PIR48574 Gene
chr16:85,529,851-85,529,878
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr16:85,563,457-85,563,484
(GRCh37/hg19)

Genomic View for PIR48574 Gene

Genes around PIR48574 on UCSC Golden Path with GeneCards custom track

PIR48574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48574 Gene

Proteins for PIR48574 Gene

Post-translational modifications for PIR48574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48574 Gene

Domains & Families for PIR48574 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48574 Gene

Function for PIR48574 Gene

Phenotypes From GWAS Catalog for PIR48574 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48574 Gene

Localization for PIR48574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48574 Gene

Pathways & Interactions for PIR48574 Gene

SuperPathways for PIR48574 Gene

No Data Available

Interacting Proteins for PIR48574 Gene

Gene Ontology (GO) - Biological Process for PIR48574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48574 Gene

Drugs & Compounds for PIR48574 Gene

No Compound Related Data Available

Transcripts for PIR48574 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48574 Gene

No ASD Table

Relevant External Links for PIR48574 Gene

GeneLoc Exon Structure for
PIR48574

No data available for mRNA/cDNA for PIR48574 Gene

Expression for PIR48574 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48574 Gene

Orthologs for PIR48574 Gene

No data available for Orthologs and Evolution for PIR48574 Gene

Paralogs for PIR48574 Gene

No data available for Paralogs for PIR48574 Gene

Variants for PIR48574 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48574 Gene

Disorders for PIR48574 Gene

No disorders were found for PIR48574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48574 Gene

Publications for PIR48574 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48574 Gene

Sources for PIR48574 Gene

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