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Aliases for PIR48569 Gene

Subcategory (RNA class) for PIR48569 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48569 Gene

No Aliases found

ORGUL Members for PIR48569 Gene

Previous GeneCards Identifiers for PIR48569 Gene

  • GC15M090776

No data available for External Ids for PIR48569 Gene

Summaries for PIR48569 Gene

GeneCards Summary for PIR48569 Gene

PIR48569 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48569 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48569 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48569 Gene

Genomics for PIR48569 Gene

GeneHancer (GH) Regulatory Elements for PIR48569 Gene

Promoters and enhancers for PIR48569 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I090229 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.8 775 6.1 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CIB1 ENSG00000284626 PIR48569 GDPGP1 ENSG00000259212 ENSG00000259314 UNC45A POLG FANCI TICRR
GH15I090209 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +20.6 20594 5.9 HDAC1 SMAD1 SIN3A FEZF1 BATF IRF4 RAD21 TCF12 SCRT2 ZNF143 SEMA4B CIB1 GDPGP1 IDH2 NGRN IQGAP1 ENSG00000228998 TTLL13P RPS12P26 PIR48569
GH15I090221 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.7 11665 1.2 ELF3 CTCF RB1 ARID4B SIN3A RAD21 RARA TEAD3 CC2D1A ZBTB48 SEMA4B ENSG00000228998 CIB1 RPS12P26 PIR48569
GH15I090219 Enhancer 0.8 ENCODE dbSUPER 0.4 +13.5 13536 0.2 CTCF MAZ NFIA BHLHE40 ARID4B SIN3A RAD21 SCRT2 ZNF444 ENSG00000228998 CIB1 RPS12P26 PIR48569 SEMA4B
GH15I090220 Enhancer 0.8 ENCODE dbSUPER 0.4 +13.3 13346 0.2 SCRT1 CTCF MAZ NFIA BHLHE40 ARID4B SIN3A REST RAD21 SCRT2 RPS12P26 PIR48569 SEMA4B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48569 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48569 Gene

Genomic Locations for PIR48569 Gene
chr15:90,233,052-90,233,080
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr15:90,776,284-90,776,312
(GRCh37/hg19)

Genomic View for PIR48569 Gene

Genes around PIR48569 on UCSC Golden Path with GeneCards custom track

PIR48569 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48569 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48569 Gene

Proteins for PIR48569 Gene

Post-translational modifications for PIR48569 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48569 Gene

Domains & Families for PIR48569 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48569 Gene

Function for PIR48569 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48569 Gene

Localization for PIR48569 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48569 Gene

Pathways & Interactions for PIR48569 Gene

SuperPathways for PIR48569 Gene

No Data Available

Interacting Proteins for PIR48569 Gene

Gene Ontology (GO) - Biological Process for PIR48569 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48569 Gene

Drugs & Compounds for PIR48569 Gene

No Compound Related Data Available

Transcripts for PIR48569 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48569 Gene

No ASD Table

Relevant External Links for PIR48569 Gene

GeneLoc Exon Structure for
PIR48569

No data available for mRNA/cDNA for PIR48569 Gene

Expression for PIR48569 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48569 Gene

Orthologs for PIR48569 Gene

No data available for Orthologs and Evolution for PIR48569 Gene

Paralogs for PIR48569 Gene

No data available for Paralogs for PIR48569 Gene

Variants for PIR48569 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48569 Gene

Disorders for PIR48569 Gene

No disorders were found for PIR48569 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48569 Gene

Publications for PIR48569 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48569 Gene

Sources for PIR48569 Gene

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