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Aliases for PIR48560 Gene

Subcategory (RNA class) for PIR48560 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48560 Gene

No Aliases found

ORGUL Members for PIR48560 Gene

Previous GeneCards Identifiers for PIR48560 Gene

  • GC11P068846

No data available for External Ids for PIR48560 Gene

Summaries for PIR48560 Gene

GeneCards Summary for PIR48560 Gene

PIR48560 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48560 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48560 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48560 Gene

Genomics for PIR48560 Gene

GeneHancer (GH) Regulatory Elements for PIR48560 Gene

Promoters and enhancers for PIR48560 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J069078 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +1.6 1590 2.4 MAZ POLR2A MAX MYC E2F6 CHD2 NFE2L2 PIR48560 TPCN2 IGHMBP2 MIR3164
GH11J069048 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -27.7 -27690 5.7 HDGF ATF1 ZFP64 ARID4B SIN3A ZBTB7B ZNF48 YY1 POLR2B GLIS2 TPCN2 LTO1 KMT5B MRGPRF-AS1 MRGPRF IGHMBP2 MRPL21 MRGPRD PIR48560
GH11J069072 Enhancer 0.9 ENCODE dbSUPER 0.7 -3.7 -3673 3.9 MEIS2 PKNOX1 TEAD4 TAL1 CCNT2 TCF12 NCOR1 CBFA2T2 TRIM24 FOS TPCN2 PIR48560
GH11J069054 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.8 -22767 2.9 HDGF PKNOX1 SMAD1 RB1 BMI1 BATF KLF5 IRF4 RAD21 RARA TPCN2 IGHMBP2 MRGPRF MRGPRF-AS1 MRPL21 PIR48560
GH11J069066 Enhancer 0.6 FANTOM5 dbSUPER 0.4 -13.1 -13081 0.3 TARDBP KLF4 TPCN2 IGHMBP2 MRGPRD PIR48560
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48560 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48560 Gene

Genomic Locations for PIR48560 Gene
chr11:69,078,578-69,078,604
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr11:68,846,046-68,846,072
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR48560 Gene

Genes around PIR48560 on UCSC Golden Path with GeneCards custom track

PIR48560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48560 Gene

Function for PIR48560 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48560 Gene

Localization for PIR48560 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48560 Gene

Pathways & Interactions for PIR48560 Gene

SuperPathways for PIR48560 Gene

No Data Available

Interacting Proteins for PIR48560 Gene

Gene Ontology (GO) - Biological Process for PIR48560 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48560 Gene

Drugs & Compounds for PIR48560 Gene

No Compound Related Data Available

Transcripts for PIR48560 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48560 Gene

No ASD Table

Relevant External Links for PIR48560 Gene

GeneLoc Exon Structure for
PIR48560

No data available for mRNA/cDNA for PIR48560 Gene

Expression for PIR48560 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48560 Gene

Orthologs for PIR48560 Gene

No data available for Orthologs and Evolution for PIR48560 Gene

Paralogs for PIR48560 Gene

No data available for Paralogs for PIR48560 Gene

Variants for PIR48560 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48560 Gene

Disorders for PIR48560 Gene

No disorders were found for PIR48560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48560 Gene

Publications for PIR48560 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48560 Gene

Sources for PIR48560 Gene

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