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Aliases for PIR48550 Gene

Subcategory (RNA class) for PIR48550 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48550 Gene

No Aliases found

ORGUL Members for PIR48550 Gene

Previous GeneCards Identifiers for PIR48550 Gene

  • GC04P077891

No data available for External Ids for PIR48550 Gene

Summaries for PIR48550 Gene

GeneCards Summary for PIR48550 Gene

PIR48550 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48550 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48550 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48550 Gene

Genomics for PIR48550 Gene

GeneHancer (GH) Regulatory Elements for PIR48550 Gene

Promoters and enhancers for PIR48550 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J076970 Enhancer 0.6 ENCODE dbSUPER 650.7 -0.3 -347 0.2 ZNF189 HMBOX1 ZIC2 PIR48550 SEPT11 TXNP6
GH04J076976 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +7.7 7657 2.5 MITF JUN HMBOX1 SPI1 SEPT11 SOWAHB PIR48550 PIR49374
GH04J076959 Enhancer 0.9 ENCODE dbSUPER 0.4 -10.2 -10220 1.1 SOX13 BACH1 BMI1 BATF IRF4 NFATC1 ATF7 IKZF2 RUNX3 CREM TXNP6 SEPT11 PIR48550
GH04J076974 Enhancer 0.4 ENCODE dbSUPER 0.7 +3.9 3873 0.2 SEPT11 PIR48550 PIR49374
GH04J076961 Enhancer 0.5 dbSUPER 0.4 -6.2 -6170 5.1 SP1 JUND ZNF146 RXRA MAX HNF4A REST SOWAHB TXNP6 PIR48550 SEPT11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48550 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48550 Gene

Genomic Locations for PIR48550 Gene
chr4:76,970,450-76,970,477
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr4:77,891,603-77,891,630
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48550 Gene

Genes around PIR48550 on UCSC Golden Path with GeneCards custom track

PIR48550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48550 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48550 Gene

Function for PIR48550 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48550 Gene

Localization for PIR48550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48550 Gene

Pathways & Interactions for PIR48550 Gene

SuperPathways for PIR48550 Gene

No Data Available

Interacting Proteins for PIR48550 Gene

Gene Ontology (GO) - Biological Process for PIR48550 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48550 Gene

Drugs & Compounds for PIR48550 Gene

No Compound Related Data Available

Transcripts for PIR48550 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48550 Gene

No ASD Table

Relevant External Links for PIR48550 Gene

GeneLoc Exon Structure for
PIR48550

No data available for mRNA/cDNA for PIR48550 Gene

Expression for PIR48550 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48550 Gene

Orthologs for PIR48550 Gene

No data available for Orthologs and Evolution for PIR48550 Gene

Paralogs for PIR48550 Gene

No data available for Paralogs for PIR48550 Gene

Variants for PIR48550 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48550 Gene

Disorders for PIR48550 Gene

No disorders were found for PIR48550 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48550 Gene

Publications for PIR48550 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48550 Gene

Sources for PIR48550 Gene

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