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Aliases for PIR48538 Gene

Subcategory (RNA class) for PIR48538 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48538 Gene

No Aliases found

ORGUL Members for PIR48538 Gene

Previous GeneCards Identifiers for PIR48538 Gene

  • GC05M136956

No data available for External Ids for PIR48538 Gene

Summaries for PIR48538 Gene

GeneCards Summary for PIR48538 Gene

PIR48538 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48538 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48538 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48538 Gene

Genomics for PIR48538 Gene

GeneHancer (GH) Regulatory Elements for PIR48538 Gene

Promoters and enhancers for PIR48538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I137620 Enhancer 0.9 Ensembl ENCODE 550.8 -1.4 -1445 2.7 GTF2F1 FOXA2 MAX EBF1 CEBPG YY1 FOS SOX5 RXRA CEBPB PIR48538 GC05M137622 SPOCK1 MIR874 KLHL3 NME5 EGR1 GC05M137619
GH05I137618 Enhancer 0.8 Ensembl ENCODE 550.8 +1.6 1593 1.7 GTF2F1 NFIB MNT CTBP1 GATA3 NFIC JUND CREB1 PRDM10 ZNF600 GC05M137622 PIR48538 SPOCK1 KLHL3 REEP2 LOC101928005 GC05P137610 GC05M137619
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48538 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48538 Gene

Genomic Locations for PIR48538 Gene
chr5:137,620,755-137,620,785
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr5:136,956,444-136,956,474
(GRCh37/hg19)

Genomic View for PIR48538 Gene

Genes around PIR48538 on UCSC Golden Path with GeneCards custom track

PIR48538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48538 Gene

ORGUL Member Location for PIR48538 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48538 Gene

Proteins for PIR48538 Gene

Post-translational modifications for PIR48538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48538 Gene

Domains & Families for PIR48538 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48538 Gene

Function for PIR48538 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48538 Gene

Localization for PIR48538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48538 Gene

Pathways & Interactions for PIR48538 Gene

SuperPathways for PIR48538 Gene

No Data Available

Interacting Proteins for PIR48538 Gene

Gene Ontology (GO) - Biological Process for PIR48538 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48538 Gene

Drugs & Compounds for PIR48538 Gene

No Compound Related Data Available

Transcripts for PIR48538 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48538 Gene

No ASD Table

Relevant External Links for PIR48538 Gene

GeneLoc Exon Structure for
PIR48538

No data available for mRNA/cDNA for PIR48538 Gene

Expression for PIR48538 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48538 Gene

Orthologs for PIR48538 Gene

No data available for Orthologs and Evolution for PIR48538 Gene

Paralogs for PIR48538 Gene

No data available for Paralogs for PIR48538 Gene

Variants for PIR48538 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48538 Gene

Disorders for PIR48538 Gene

No disorders were found for PIR48538 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48538 Gene

Publications for PIR48538 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48538 Gene

Sources for PIR48538 Gene

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