Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR48490 Gene

Subcategory (RNA class) for PIR48490 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48490 Gene

No Aliases found

ORGUL Members for PIR48490 Gene

Previous GeneCards Identifiers for PIR48490 Gene

  • GC06P033929
  • GC06P034407
  • GC06P035718
  • GC06P036267
  • GC06P037253
  • GC06P034871
  • GC06P035452
  • GC06P037204
  • GC06P038267
  • GC06P038908
  • GC06P039495
  • GC06P040056

No data available for External Ids for PIR48490 Gene

Summaries for PIR48490 Gene

GeneCards Summary for PIR48490 Gene

PIR48490 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48490 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48490

Additional gene information for PIR48490 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48490 Gene

Genomics for PIR48490 Gene

GeneHancer (GH) Regulatory Elements for PIR48490 Gene

Promoters and enhancers for PIR48490 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I033908 Enhancer 0.7 ENCODE 550.8 +0.4 360 0.2 FOXA2 RXRA TAF1 MAX REST RAD21 RARA GABPA YY1 HNF1A GC06P041769 GC06P041770 GC06P041773 GC06P041777 GC06P041784 GC06P041799 GC06P041813 GC06P041817 GC06P041834 GC06P041842
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48490 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48490 Gene

Genomic Locations for PIR48490 Gene
chr6:33,907,759-33,907,791
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand
chr6:33,875,536-33,875,568
(GRCh37/hg19)

Genomic View for PIR48490 Gene

Genes around PIR48490 on UCSC Golden Path with GeneCards custom track

PIR48490 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48490 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48490 Gene

ORGUL Member Location for PIR48490 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48490 Gene

Proteins for PIR48490 Gene

Post-translational modifications for PIR48490 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48490 Gene

Domains & Families for PIR48490 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48490 Gene

Function for PIR48490 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48490 Gene

Localization for PIR48490 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48490 Gene

Pathways & Interactions for PIR48490 Gene

SuperPathways for PIR48490 Gene

No Data Available

Interacting Proteins for PIR48490 Gene

Gene Ontology (GO) - Biological Process for PIR48490 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48490 Gene

Drugs & Compounds for PIR48490 Gene

No Compound Related Data Available

Transcripts for PIR48490 Gene

fRNAdb Secondary structures for PIR48490 Gene

  • FR042854

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48490 Gene

No ASD Table

Relevant External Links for PIR48490 Gene

GeneLoc Exon Structure for
PIR48490

No data available for mRNA/cDNA for PIR48490 Gene

Expression for PIR48490 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48490 Gene

Orthologs for PIR48490 Gene

No data available for Orthologs and Evolution for PIR48490 Gene

Paralogs for PIR48490 Gene

No data available for Paralogs for PIR48490 Gene

Variants for PIR48490 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48490 Gene

Disorders for PIR48490 Gene

No disorders were found for PIR48490 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48490 Gene

Publications for PIR48490 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48490 Gene

Sources for PIR48490 Gene

Content
Loading form....