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Aliases for PIR48489 Gene

Subcategory (RNA class) for PIR48489 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48489 Gene

No Aliases found

ORGUL Members for PIR48489 Gene

Previous GeneCards Identifiers for PIR48489 Gene

  • GC15P069821

No data available for External Ids for PIR48489 Gene

Summaries for PIR48489 Gene

GeneCards Summary for PIR48489 Gene

PIR48489 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48489 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48489 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48489 Gene

Genomics for PIR48489 Gene

GeneHancer (GH) Regulatory Elements for PIR48489 Gene

Promoters and enhancers for PIR48489 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J069525 Enhancer 0.6 FANTOM5 0.7 -3.4 -3416 0.3 USF1 PHF21A NFYB ASH1L FOS PRDM1 PIR48489 LINC00593 DRAIC PCAT29
GH15J069556 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +28.3 28343 2.5 PKNOX1 FOXA2 SIN3A BRCA1 ETS1 YY1 FOS RXRA TSHZ1 REST MIR629 ENSG00000259457 PIR48489 DRAIC LINC00593 PCAT29
GH15J069532 Enhancer 0.5 ENCODE 0.7 +2.9 2937 0.9 SP1 FOXP2 PRDM10 ZNF398 ZIC2 TLE3 MIR629 PIR48489 ENSG00000259457 DRAIC LINC00593 PCAT29
GH15J069561 Enhancer 1 ENCODE dbSUPER 0.3 +33.1 33100 2.3 FOXA2 MLX RAD21 RARA YY1 EGR1 CREM THAP11 MIXL1 NFKBIZ MIR629 ENSG00000259457 PIR48489 DRAIC LINC00593 PCAT29
GH15J069554 Enhancer 0.9 ENCODE dbSUPER 0.3 +25.5 25457 1.1 SOX13 PKNOX1 FOXA2 JUN ZBTB40 CTBP1 GATA3 RCOR1 FOSL2 FOS MIR629 ENSG00000259457 PIR48489 DRAIC LINC00593 PCAT29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48489 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48489 Gene

Genomic Locations for PIR48489 Gene
chr15:69,529,117-69,529,145
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr15:69,821,456-69,821,484
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR48489 Gene

Genes around PIR48489 on UCSC Golden Path with GeneCards custom track

PIR48489 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48489 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48489 Gene

Function for PIR48489 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48489 Gene

Localization for PIR48489 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48489 Gene

Pathways & Interactions for PIR48489 Gene

SuperPathways for PIR48489 Gene

No Data Available

Interacting Proteins for PIR48489 Gene

Gene Ontology (GO) - Biological Process for PIR48489 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48489 Gene

Drugs & Compounds for PIR48489 Gene

No Compound Related Data Available

Transcripts for PIR48489 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48489 Gene

No ASD Table

Relevant External Links for PIR48489 Gene

GeneLoc Exon Structure for
PIR48489

No data available for mRNA/cDNA for PIR48489 Gene

Expression for PIR48489 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48489 Gene

Orthologs for PIR48489 Gene

No data available for Orthologs and Evolution for PIR48489 Gene

Paralogs for PIR48489 Gene

No data available for Paralogs for PIR48489 Gene

Variants for PIR48489 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48489 Gene

Disorders for PIR48489 Gene

No disorders were found for PIR48489 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48489 Gene

Publications for PIR48489 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48489 Gene

Sources for PIR48489 Gene

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