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Aliases for PIR48473 Gene

Subcategory (RNA class) for PIR48473 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR48473 Gene

No Aliases found

ORGUL Members for PIR48473 Gene

No data available for External Ids for PIR48473 Gene

Summaries for PIR48473 Gene

GeneCards Summary for PIR48473 Gene

PIR48473 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48473 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48473 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48473 Gene

Genomics for PIR48473 Gene

GeneHancer (GH) Regulatory Elements for PIR48473 Gene

Promoters and enhancers for PIR48473 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I025538 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 0.4 +7.5 7492 2.7 ATF1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 NINL ABHD12 ZNF337 FAM182B RNU6ATAC17P ZNF337-AS1 GC20P025533 PIR48473
GH20I025543 Enhancer 0.7 ENCODE 0.8 +4.2 4226 0.4 PKNOX1 ZNF792 FOSL1 ZNF121 ZNF316 SCRT2 FOSL2 FOS NFE2 ZNF600 ZNF337 NINL RNU6ATAC17P PIR48473 GC20P025533
GH20I025545 Enhancer 0.7 ENCODE 0.8 +3.8 3815 0.2 IRF2 PKNOX1 ATF1 CEBPG FOSL1 FOS CREM L3MBTL2 NRF1 HLF NINL RNU6ATAC17P NANP PIR48473 GC20P025533
GH20I025544 Enhancer 0.5 ENCODE 0.8 +2.4 2357 2 PRDM6 ZBTB48 PRDM10 ATF7 WT1 ABHD12 NINL RNU6ATAC17P PYGB PIR48473 GC20P025533
GH20I025541 Enhancer 1 Ensembl ENCODE 0.4 +5.2 5231 1.3 FOXA2 DMAP1 ZBTB40 RARA ZNF121 THAP11 ZNF362 CEBPB NFIL3 GLIS1 ABHD12 ZNF337 NINL RNU6ATAC17P FAM182B GC20P025533 PIR48473
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48473 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48473 Gene

Genomic Locations for PIR48473 Gene
chr20:25,547,558-25,547,585
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr20:25,528,194-25,528,221
(GRCh37/hg19)

Genomic View for PIR48473 Gene

Genes around PIR48473 on UCSC Golden Path with GeneCards custom track

PIR48473 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48473 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48473 Gene

Proteins for PIR48473 Gene

Post-translational modifications for PIR48473 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48473 Gene

Domains & Families for PIR48473 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48473 Gene

Function for PIR48473 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48473 Gene

Localization for PIR48473 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48473 Gene

Pathways & Interactions for PIR48473 Gene

SuperPathways for PIR48473 Gene

No Data Available

Interacting Proteins for PIR48473 Gene

Gene Ontology (GO) - Biological Process for PIR48473 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48473 Gene

Drugs & Compounds for PIR48473 Gene

No Compound Related Data Available

Transcripts for PIR48473 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48473 Gene

No ASD Table

Relevant External Links for PIR48473 Gene

GeneLoc Exon Structure for
PIR48473

No data available for mRNA/cDNA for PIR48473 Gene

Expression for PIR48473 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48473 Gene

Orthologs for PIR48473 Gene

No data available for Orthologs and Evolution for PIR48473 Gene

Paralogs for PIR48473 Gene

No data available for Paralogs for PIR48473 Gene

Variants for PIR48473 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48473 Gene

Disorders for PIR48473 Gene

No disorders were found for PIR48473 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48473 Gene

Publications for PIR48473 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48473 Gene

Sources for PIR48473 Gene

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