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Aliases for PIR48426 Gene

Subcategory (RNA class) for PIR48426 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48426 Gene

No Aliases found

ORGUL Members for PIR48426 Gene

Previous GeneCards Identifiers for PIR48426 Gene

  • GC19M044251

No data available for External Ids for PIR48426 Gene

Summaries for PIR48426 Gene

GeneCards Summary for PIR48426 Gene

PIR48426 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48426 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48426 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48426 Gene

Genomics for PIR48426 Gene

GeneHancer (GH) Regulatory Elements for PIR48426 Gene

Promoters and enhancers for PIR48426 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J043747 Enhancer 0.9 ENCODE dbSUPER 650.7 -0.8 -752 2 EBF1 RELA EED ZNF143 ATF7 PRDM10 ETV6 BCLAF1 IKZF2 RUNX3 PIR48426 SMG9
GH19J043744 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.4 2365 1.6 HDGF RAD21 ARID2 SCRT2 ZNF143 IKZF2 RUNX3 THAP11 ZNF654 YY2 SMG9 PLAUR ZNF180 ZNF45 ZNF224 ZNF155 ZNF234 KCNN4 ZNF284 IRGC
GH19J043738 Enhancer 0.8 ENCODE dbSUPER 0.4 +7.3 7305 3.1 STAT1 ZNF521 ZNF189 MAX SIN3A CEBPB GABPA ZNF148 GLIS2 POLR2A ZNF234 ZNF180 ZNF224 ZNF45 ZNF283 KCNN4 IRGC ZNF155 ZNF221 PLAUR
GH19J043725 Enhancer 0.9 ENCODE dbSUPER 0.3 +21.8 21835 0.2 STAT5A EBF1 IRF4 RELA POLR2A NFATC1 EED BCLAF1 IKZF2 RUNX3 PLAUR KCNN4 ZNF428 IRGC PIR48426
GH19J043731 Enhancer 0.6 Ensembl dbSUPER 0.4 +15.4 15375 0.6 ZNF473 POLR2A GLIS1 SRRM5 ZNF285B ZNF222 PIR48426 IRGC SMG9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48426 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48426 Gene

Genomic Locations for PIR48426 Gene
chr19:43,747,453-43,747,479
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr19:44,251,605-44,251,631
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR48426 Gene

Genes around PIR48426 on UCSC Golden Path with GeneCards custom track

PIR48426 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48426 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48426 Gene

Function for PIR48426 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48426 Gene

Localization for PIR48426 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48426 Gene

Pathways & Interactions for PIR48426 Gene

SuperPathways for PIR48426 Gene

No Data Available

Interacting Proteins for PIR48426 Gene

Gene Ontology (GO) - Biological Process for PIR48426 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48426 Gene

Drugs & Compounds for PIR48426 Gene

No Compound Related Data Available

Transcripts for PIR48426 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48426 Gene

No ASD Table

Relevant External Links for PIR48426 Gene

GeneLoc Exon Structure for
PIR48426

No data available for mRNA/cDNA for PIR48426 Gene

Expression for PIR48426 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48426 Gene

Orthologs for PIR48426 Gene

No data available for Orthologs and Evolution for PIR48426 Gene

Paralogs for PIR48426 Gene

No data available for Paralogs for PIR48426 Gene

Variants for PIR48426 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48426 Gene

Disorders for PIR48426 Gene

No disorders were found for PIR48426 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48426 Gene

Publications for PIR48426 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48426 Gene

Sources for PIR48426 Gene

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