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Aliases for PIR48425 Gene

Subcategory (RNA class) for PIR48425 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48425 Gene

No Aliases found

ORGUL Members for PIR48425 Gene

Previous GeneCards Identifiers for PIR48425 Gene

  • GC12P116856

No data available for External Ids for PIR48425 Gene

Summaries for PIR48425 Gene

GeneCards Summary for PIR48425 Gene

PIR48425 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48425 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48425 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48425 Gene

Genomics for PIR48425 Gene

GeneHancer (GH) Regulatory Elements for PIR48425 Gene

Promoters and enhancers for PIR48425 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J116422 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +4.9 4938 1.1 SMARCE1 RFX1 POLR2A FOS RAD21 NR2F2 MIR4472-2 PIR48425
GH12J116415 Enhancer 0.8 ENCODE dbSUPER 0.7 -2.5 -2478 0.4 YBX1 STAT5A MNT PLRG1 MCM2 ZNF311 ZKSCAN1 SP1 ZFHX2 ZBTB33 MAP1LC3B2 FBXW8 MED13L PIR48425 ENSG00000258346
GH12J116405 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -11.8 -11839 2.5 FOXA2 PKNOX1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF213 FOS KLF13 MAP1LC3B2 MED13L FBXW8 FBXO21 PIR48425 ENSG00000258346
GH12J116425 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +9.0 8991 4.1 NEUROD1 SIN3A TCF12 ZNF121 ZNF766 GATA2 FOS REST ZNF592 SMARCA4 MIR4472-2 PIR48425
GH12J116380 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -35.1 -35135 6.1 HDGF CLOCK SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A YY1 ZNF766 FBXW8 MAP1LC3B2 MED13L ENSG00000258034 ENSG00000258346 PIR48425
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48425 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48425 Gene

Genomic Locations for PIR48425 Gene
chr12:116,418,383-116,418,410
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr12:116,856,188-116,856,215
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48425 Gene

Genes around PIR48425 on UCSC Golden Path with GeneCards custom track

PIR48425 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48425 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48425 Gene

Function for PIR48425 Gene

Phenotypes From GWAS Catalog for PIR48425 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48425 Gene

Localization for PIR48425 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48425 Gene

Pathways & Interactions for PIR48425 Gene

SuperPathways for PIR48425 Gene

No Data Available

Interacting Proteins for PIR48425 Gene

Gene Ontology (GO) - Biological Process for PIR48425 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48425 Gene

Drugs & Compounds for PIR48425 Gene

No Compound Related Data Available

Transcripts for PIR48425 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48425 Gene

No ASD Table

Relevant External Links for PIR48425 Gene

GeneLoc Exon Structure for
PIR48425

No data available for mRNA/cDNA for PIR48425 Gene

Expression for PIR48425 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48425 Gene

Orthologs for PIR48425 Gene

No data available for Orthologs and Evolution for PIR48425 Gene

Paralogs for PIR48425 Gene

No data available for Paralogs for PIR48425 Gene

Variants for PIR48425 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48425 Gene

Disorders for PIR48425 Gene

No disorders were found for PIR48425 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48425 Gene

Publications for PIR48425 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48425 Gene

Sources for PIR48425 Gene

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