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Aliases for PIR48413 Gene

Subcategory (RNA class) for PIR48413 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48413 Gene

No Aliases found

ORGUL Members for PIR48413 Gene

No data available for External Ids for PIR48413 Gene

Summaries for PIR48413 Gene

GeneCards Summary for PIR48413 Gene

PIR48413 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48413 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48413 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48413 Gene

Genomics for PIR48413 Gene

GeneHancer (GH) Regulatory Elements for PIR48413 Gene

Promoters and enhancers for PIR48413 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J016612 Enhancer 1.3 Ensembl ENCODE dbSUPER 650.7 -0.2 -185 1.9 PKNOX1 FOXA2 RB1 ZSCAN4 ARID4B SIN3A ZNF2 ZNF48 RAD21 ZEB1 C11orf58 LOC105376571 PIR48413 SOX6
GH11J016611 Enhancer 0.4 ENCODE 650.7 -1.7 -1690 0.2 SUZ12 ZBTB33 EZH2 C11orf58 LOC105376571 PIR48413 RN7SL188P SOX6
GH11J016737 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.1 +125.3 125282 3 HDGF FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B SOX6 C11orf58 SNORD14A SNORD14B PIR48413
GH11J016669 Enhancer 0.4 ENCODE 0.2 +56.2 56201 1.1 JUND BACH1 C11orf58 PIR48413 SOX6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48413 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48413 Gene

Genomic Locations for PIR48413 Gene
chr11:16,613,759-16,613,787
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr11:16,635,306-16,635,334
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR48413 Gene

Genes around PIR48413 on UCSC Golden Path with GeneCards custom track

PIR48413 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48413 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48413 Gene

Function for PIR48413 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48413 Gene

Localization for PIR48413 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48413 Gene

Pathways & Interactions for PIR48413 Gene

SuperPathways for PIR48413 Gene

No Data Available

Interacting Proteins for PIR48413 Gene

Gene Ontology (GO) - Biological Process for PIR48413 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48413 Gene

Drugs & Compounds for PIR48413 Gene

No Compound Related Data Available

Transcripts for PIR48413 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48413 Gene

No ASD Table

Relevant External Links for PIR48413 Gene

GeneLoc Exon Structure for
PIR48413

No data available for mRNA/cDNA for PIR48413 Gene

Expression for PIR48413 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48413 Gene

Orthologs for PIR48413 Gene

No data available for Orthologs and Evolution for PIR48413 Gene

Paralogs for PIR48413 Gene

No data available for Paralogs for PIR48413 Gene

Variants for PIR48413 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48413 Gene

Disorders for PIR48413 Gene

No disorders were found for PIR48413 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48413 Gene

Publications for PIR48413 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48413 Gene

Sources for PIR48413 Gene

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