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Aliases for PIR48412 Gene

Subcategory (RNA class) for PIR48412 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR48412 Gene

No Aliases found

ORGUL Members for PIR48412 Gene

Previous GeneCards Identifiers for PIR48412 Gene

  • GC03M075446
  • GC03M075450
  • GC03M075456
  • GC03M075459
  • GC03M075465
  • GC03M075404
  • GC03M075407
  • GC03M075414
  • GC03M075423
  • GC03M075430
  • GC03M075440
  • GC03M075469

No data available for External Ids for PIR48412 Gene

Summaries for PIR48412 Gene

GeneCards Summary for PIR48412 Gene

PIR48412 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48412 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48412

Additional gene information for PIR48412 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48412 Gene

Genomics for PIR48412 Gene

GeneHancer (GH) Regulatory Elements for PIR48412 Gene

Promoters and enhancers for PIR48412 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I075394 Enhancer 0.8 ENCODE 550.8 +1.1 1127 0.2 HDAC1 KLF17 FEZF1 TCF12 NCOA1 ZEB2 NFIC SMARCA4 IKZF1 KDM1A ENSG00000242953 GC03M075392 GC03M075483 GC03M075493 LOC105377169 PIR39479 PIR39498 PIR48412 PIR43407 LSP1P2
GH03I075393 Enhancer 0.7 ENCODE 550.8 +1.4 1427 0.2 HDAC1 KLF1 TAL1 KLF17 FEZF1 TCF12 NCOR1 CBFA2T2 TRIM24 SMARCE1 GC03M075392 GC03M075483 GC03M075493 PIR39479 PIR39498 PIR48412 PIR43407 LSP1P2 PIR44697 LOC105377169
GH03I075395 Enhancer 0.2 Ensembl 550.8 -1.4 -1408 1 ENSG00000242953 GC03M075483 PIR48412 LSP1P2 LINC00960 GC03P075401
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR48412 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48412 Gene

Genomic Locations for PIR48412 Gene
chr3:75,394,641-75,394,672
(GRCh38/hg38)
Size:
32 bases
Orientation:
Minus strand
chr3:75,443,792-75,443,823
(GRCh37/hg19)

Genomic View for PIR48412 Gene

Genes around PIR48412 on UCSC Golden Path with GeneCards custom track

PIR48412 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48412 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48412 Gene

ORGUL Member Location for PIR48412 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48412 Gene

Proteins for PIR48412 Gene

Post-translational modifications for PIR48412 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR48412 Gene

Domains & Families for PIR48412 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR48412 Gene

Function for PIR48412 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48412 Gene

Localization for PIR48412 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48412 Gene

Pathways & Interactions for PIR48412 Gene

SuperPathways for PIR48412 Gene

No Data Available

Interacting Proteins for PIR48412 Gene

Gene Ontology (GO) - Biological Process for PIR48412 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48412 Gene

Drugs & Compounds for PIR48412 Gene

No Compound Related Data Available

Transcripts for PIR48412 Gene

fRNAdb Secondary structures for PIR48412 Gene

  • FR349325

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48412 Gene

No ASD Table

Relevant External Links for PIR48412 Gene

GeneLoc Exon Structure for
PIR48412

No data available for mRNA/cDNA for PIR48412 Gene

Expression for PIR48412 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48412 Gene

Orthologs for PIR48412 Gene

No data available for Orthologs and Evolution for PIR48412 Gene

Paralogs for PIR48412 Gene

No data available for Paralogs for PIR48412 Gene

Variants for PIR48412 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48412 Gene

Disorders for PIR48412 Gene

No disorders were found for PIR48412 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48412 Gene

Publications for PIR48412 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48412 Gene

Sources for PIR48412 Gene

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