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Aliases for PIR48197 Gene

Subcategory (RNA class) for PIR48197 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR48197 Gene

No Aliases found

ORGUL Members for PIR48197 Gene

Previous GeneCards Identifiers for PIR48197 Gene

  • GC11M075153

No data available for External Ids for PIR48197 Gene

Summaries for PIR48197 Gene

GeneCards Summary for PIR48197 Gene

PIR48197 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48197 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48197

Additional gene information for PIR48197 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48197 Gene

Genomics for PIR48197 Gene

GeneHancer (GH) Regulatory Elements for PIR48197 Gene

Promoters and enhancers for PIR48197 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J075445 Enhancer 0.8 ENCODE 0.7 -3.0 -2998 0.2 HDAC1 HDGF RB1 ARID4B KLF17 SIN3A IRF4 RAD21 ZNF121 ARID2 SNORD15B RPS3 EMSY POLD3 RNF169 GDPD5 SERPINH1 RN7SL239P GC11M075443 PIR48197
GH11J075474 Enhancer 1.1 Ensembl ENCODE 0.3 -33.5 -33450 2.7 HDGF PKNOX1 SMAD1 ARNT GLI4 POLR2B ATF7 ZNF662 ZNF592 ATF4 EMSY KLHL35 GDPD5 LOC105369391 POLD3 SERPINH1 ENSG00000254837 ENSG00000254460 PIR48197 GC11M075443
GH11J075468 Enhancer 1 Ensembl ENCODE 0.3 -26.6 -26627 2.2 HDGF PTBP1 ATF1 ATF7 CREM NCOA1 ZNF592 NR2F2 SP1 NFIC GDPD5 KLHL35 SNORD15B SERPINH1 LOC105369391 MOGAT2 GC11M075443 PIR48197 ENSG00000254460
GH11J075480 Enhancer 0.9 ENCODE 0.3 -37.9 -37938 0.2 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 NCOA1 ZNF592 GDPD5 ENSG00000254460 PIR48197 GC11M075443
GH11J075451 Enhancer 0.6 ENCODE 0.4 -9.1 -9148 0.1 CTCF MAZ NRF1 REST ZNF2 RAD21 CBX1 CTBP1 CBX5 TARDBP PIR48197 GC11M075443 ENSG00000254460 GDPD5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48197 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48197 Gene

Genomic Locations for PIR48197 Gene
chr11:75,442,463-75,442,493
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr11:75,153,508-75,153,538
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR48197 Gene

Genes around PIR48197 on UCSC Golden Path with GeneCards custom track

PIR48197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48197 Gene

ORGUL Member Location for PIR48197 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48197 Gene

Function for PIR48197 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48197 Gene

Localization for PIR48197 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48197 Gene

Pathways & Interactions for PIR48197 Gene

SuperPathways for PIR48197 Gene

No Data Available

Interacting Proteins for PIR48197 Gene

Gene Ontology (GO) - Biological Process for PIR48197 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48197 Gene

Drugs & Compounds for PIR48197 Gene

No Compound Related Data Available

Transcripts for PIR48197 Gene

fRNAdb Secondary structures for PIR48197 Gene

  • FR011163

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48197 Gene

No ASD Table

Relevant External Links for PIR48197 Gene

GeneLoc Exon Structure for
PIR48197

No data available for mRNA/cDNA for PIR48197 Gene

Expression for PIR48197 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48197 Gene

Orthologs for PIR48197 Gene

No data available for Orthologs and Evolution for PIR48197 Gene

Paralogs for PIR48197 Gene

No data available for Paralogs for PIR48197 Gene

Variants for PIR48197 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48197 Gene

Disorders for PIR48197 Gene

No disorders were found for PIR48197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48197 Gene

Publications for PIR48197 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48197 Gene

Sources for PIR48197 Gene

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