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Aliases for PIR48189 Gene

Subcategory (RNA class) for PIR48189 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48189 Gene

No Aliases found

ORGUL Members for PIR48189 Gene

Previous GeneCards Identifiers for PIR48189 Gene

  • GC16P012192

No data available for External Ids for PIR48189 Gene

Summaries for PIR48189 Gene

GeneCards Summary for PIR48189 Gene

PIR48189 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48189 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48189 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48189 Gene

Genomics for PIR48189 Gene

GeneHancer (GH) Regulatory Elements for PIR48189 Gene

Promoters and enhancers for PIR48189 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012097 Enhancer 1.2 ENCODE dbSUPER 650.7 -0.7 -673 1.6 PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 ZNF766 PIR48189 SNX29 GSPT1 COX6CP1 LOC105371084 ENSG00000261293
GH16J012095 Enhancer 1 Ensembl ENCODE 0.7 -2.4 -2381 1.6 ELF3 CTCF DNMT3B ZSCAN9 RAD21 ZNF614 ZNF316 ZNF143 SMC3 ZNF444 ENSG00000261293 SNX29 PIR48189
GH16J012119 Enhancer 0.7 Ensembl ENCODE 0.3 +21.5 21457 0.6 HIC1 ZNF335 KLF1 ELF1 GC16P012120 PIR48189 SNX29
GH16J012113 Enhancer 0.5 ENCODE 0.4 +15.5 15543 1.2 POLR2A ZNF189 CREB1 RCOR1 CHD2 NR2F2 SNX29 GC16P012120 PIR48189
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48189 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48189 Gene

Genomic Locations for PIR48189 Gene
chr16:12,098,440-12,098,466
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr16:12,192,297-12,192,323
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR48189 Gene

Genes around PIR48189 on UCSC Golden Path with GeneCards custom track

PIR48189 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48189 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48189 Gene

Function for PIR48189 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48189 Gene

Localization for PIR48189 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48189 Gene

Pathways & Interactions for PIR48189 Gene

SuperPathways for PIR48189 Gene

No Data Available

Interacting Proteins for PIR48189 Gene

Gene Ontology (GO) - Biological Process for PIR48189 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48189 Gene

Drugs & Compounds for PIR48189 Gene

No Compound Related Data Available

Transcripts for PIR48189 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48189 Gene

No ASD Table

Relevant External Links for PIR48189 Gene

GeneLoc Exon Structure for
PIR48189

No data available for mRNA/cDNA for PIR48189 Gene

Expression for PIR48189 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48189 Gene

Orthologs for PIR48189 Gene

No data available for Orthologs and Evolution for PIR48189 Gene

Paralogs for PIR48189 Gene

No data available for Paralogs for PIR48189 Gene

Variants for PIR48189 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48189 Gene

Disorders for PIR48189 Gene

No disorders were found for PIR48189 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48189 Gene

Publications for PIR48189 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48189 Gene

Sources for PIR48189 Gene

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