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Aliases for PIR48172 Gene

Subcategory (RNA class) for PIR48172 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR48172 Gene

No Aliases found

ORGUL Members for PIR48172 Gene

Previous GeneCards Identifiers for PIR48172 Gene

  • GC09P131899

No data available for External Ids for PIR48172 Gene

Summaries for PIR48172 Gene

GeneCards Summary for PIR48172 Gene

PIR48172 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48172 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48172

Additional gene information for PIR48172 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48172 Gene

Genomics for PIR48172 Gene

GeneHancer (GH) Regulatory Elements for PIR48172 Gene

Promoters and enhancers for PIR48172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J129136 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.9 2891 8.2 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A FEZF1 YBX1 ZNF2 PTPA CRAT NUP188 GLE1 ENSG00000268707 URM1 TOR1B CIZ1 PKN3 CERCAM
GH09J129131 Enhancer 1.1 ENCODE dbSUPER 0.4 -5.8 -5795 0.7 HDGF SMAD1 RB1 KLF17 SIN3A ZNF2 KLF5 IRF4 BRCA1 ZNF48 CRAT ENSG00000234055 URM1 NTMT1 C9orf50 NUP188 GC09P129130 PIR47941 GC09P129138 PIR48172
GH09J129132 Enhancer 0.6 ENCODE dbSUPER 0.7 -4.1 -4076 1.6 ZNF664 ZNF16 TCF7L2 CRAT CIZ1 NUP188 GOLGA2 NTMT1 C9orf50 CERCAM GC09P129130 GC09P129138 PIR47941
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48172 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48172 Gene

Genomic Locations for PIR48172 Gene
chr9:129,137,603-129,137,634
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand
chr9:131,899,882-131,899,913
(GRCh37/hg19)
Size:
32 bases
Orientation:
Plus strand

Genomic View for PIR48172 Gene

Genes around PIR48172 on UCSC Golden Path with GeneCards custom track

PIR48172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48172 Gene

ORGUL Member Location for PIR48172 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48172 Gene

Function for PIR48172 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48172 Gene

Localization for PIR48172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48172 Gene

Pathways & Interactions for PIR48172 Gene

SuperPathways for PIR48172 Gene

No Data Available

Interacting Proteins for PIR48172 Gene

Gene Ontology (GO) - Biological Process for PIR48172 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48172 Gene

Drugs & Compounds for PIR48172 Gene

No Compound Related Data Available

Transcripts for PIR48172 Gene

fRNAdb Secondary structures for PIR48172 Gene

  • FR393377

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48172 Gene

No ASD Table

Relevant External Links for PIR48172 Gene

GeneLoc Exon Structure for
PIR48172

No data available for mRNA/cDNA for PIR48172 Gene

Expression for PIR48172 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48172 Gene

Orthologs for PIR48172 Gene

No data available for Orthologs and Evolution for PIR48172 Gene

Paralogs for PIR48172 Gene

No data available for Paralogs for PIR48172 Gene

Variants for PIR48172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48172 Gene

Disorders for PIR48172 Gene

No disorders were found for PIR48172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48172 Gene

Publications for PIR48172 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48172 Gene

Sources for PIR48172 Gene

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