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Aliases for PIR48162 Gene

Subcategory (RNA class) for PIR48162 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48162 Gene

No Aliases found

ORGUL Members for PIR48162 Gene

No data available for External Ids for PIR48162 Gene

Summaries for PIR48162 Gene

GeneCards Summary for PIR48162 Gene

PIR48162 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48162 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48162 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48162 Gene

Genomics for PIR48162 Gene

GeneHancer (GH) Regulatory Elements for PIR48162 Gene

Promoters and enhancers for PIR48162 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J043738 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -5.4 -5385 1.8 HDAC1 ATF1 MZF1 FEZF1 ZNF213 ZNF366 CREM NCOA1 CEBPB ZEB2 HSD17B12 PIR48162 ENSG00000283375 ENSG00000283341
GH11J043735 Enhancer 0.7 Ensembl ENCODE 0.7 -2.7 -2716 2.2 MEF2D ATF4 POLR2A IKZF1 CEBPB CEBPG RUNX3 PIR48162 HSD17B12 ENSG00000283375 ENSG00000283341
GH11J043746 Enhancer 1.1 Ensembl ENCODE 0.4 -13.5 -13456 1.7 HDGF PKNOX1 ATF1 TCF12 ATF7 NCOA1 REST ZNF592 ATF4 SMARCA4 HSD17B12 PIR48162 ENSG00000283375 ENSG00000283341
GH11J043830 Enhancer 1 Ensembl ENCODE 0.2 -97.3 -97257 1.9 INSM2 SIN3A FEZF1 ETS1 ZEB1 EGR1 ZNF366 FOS ZNF362 CEBPB HSD17B12 MIR129-2 ENSG00000254409 ALKBH3-AS1 ENSG00000283375 LOC105376644 PIR48162 ENSG00000283341
GH11J043787 Enhancer 0.8 Ensembl ENCODE 0.2 -55.3 -55301 4.1 CTCF MAFG CEBPG FOSL1 ATF4 MAFF ZNF316 JUND POLR2A SCRT2 HSD17B12 LOC105376644 ALKBH3 MIR129-2 PIR48162 ENSG00000283375 ENSG00000283341
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48162 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48162 Gene

Genomic Locations for PIR48162 Gene
chr11:43,733,958-43,733,985
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr11:43,755,508-43,755,535
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR48162 Gene

Genes around PIR48162 on UCSC Golden Path with GeneCards custom track

PIR48162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48162 Gene

Function for PIR48162 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48162 Gene

Localization for PIR48162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48162 Gene

Pathways & Interactions for PIR48162 Gene

SuperPathways for PIR48162 Gene

No Data Available

Interacting Proteins for PIR48162 Gene

Gene Ontology (GO) - Biological Process for PIR48162 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48162 Gene

Drugs & Compounds for PIR48162 Gene

No Compound Related Data Available

Transcripts for PIR48162 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48162 Gene

No ASD Table

Relevant External Links for PIR48162 Gene

GeneLoc Exon Structure for
PIR48162

No data available for mRNA/cDNA for PIR48162 Gene

Expression for PIR48162 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48162 Gene

Orthologs for PIR48162 Gene

No data available for Orthologs and Evolution for PIR48162 Gene

Paralogs for PIR48162 Gene

No data available for Paralogs for PIR48162 Gene

Variants for PIR48162 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48162 Gene

Disorders for PIR48162 Gene

No disorders were found for PIR48162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48162 Gene

Publications for PIR48162 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48162 Gene

Sources for PIR48162 Gene

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