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Aliases for PIR48142 Gene

Subcategory (RNA class) for PIR48142 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48142 Gene

No Aliases found

ORGUL Members for PIR48142 Gene

Previous GeneCards Identifiers for PIR48142 Gene

  • GC09P124522

No data available for External Ids for PIR48142 Gene

Summaries for PIR48142 Gene

GeneCards Summary for PIR48142 Gene

PIR48142 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48142 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48142 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48142 Gene

Genomics for PIR48142 Gene

GeneHancer (GH) Regulatory Elements for PIR48142 Gene

Promoters and enhancers for PIR48142 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J121741 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 0.4 -16.2 -16183 6.2 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ZNF2 YY1 ZFP91 RXRA SP5 ENSG00000229854 LOC105376257 PIR48142 DAB2IP
GH09J121747 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.0 -10046 5.3 ELF3 FOXA2 MLX ARID4B ZNF48 ZSCAN9 ZNF614 CREM NFYC ZBTB25 FBXW2 PSMD5 ENSG00000229854 PIR48142 LOC105376257 DAB2IP
GH09J121734 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.8 -22760 6.3 FOXA2 ARID4B SIN3A DMAP1 GLIS2 ELK1 ZNF143 DEK SP5 SMARCB1 LOC105376257 ENSG00000229854 GSN PIR48142 DAB2IP
GH09J121753 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -5.7 -5686 1.7 RFX1 ZIC2 NR2F2 ZFHX2 GLIS1 ZNF600 PRDM10 EGR2 PIR48142 LOC105376257 DAB2IP
GH09J121755 Enhancer 0.3 dbSUPER 0.7 -4.1 -4106 1.3 RFX1 PIR48142 LOC105376257 DAB2IP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48142 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48142 Gene

Genomic Locations for PIR48142 Gene
chr9:121,760,293-121,760,320
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr9:124,522,572-124,522,599
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48142 Gene

Genes around PIR48142 on UCSC Golden Path with GeneCards custom track

PIR48142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48142 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48142 Gene

Function for PIR48142 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48142 Gene

Localization for PIR48142 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48142 Gene

Pathways & Interactions for PIR48142 Gene

SuperPathways for PIR48142 Gene

No Data Available

Interacting Proteins for PIR48142 Gene

Gene Ontology (GO) - Biological Process for PIR48142 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48142 Gene

Drugs & Compounds for PIR48142 Gene

No Compound Related Data Available

Transcripts for PIR48142 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48142 Gene

No ASD Table

Relevant External Links for PIR48142 Gene

GeneLoc Exon Structure for
PIR48142

No data available for mRNA/cDNA for PIR48142 Gene

Expression for PIR48142 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48142 Gene

Orthologs for PIR48142 Gene

No data available for Orthologs and Evolution for PIR48142 Gene

Paralogs for PIR48142 Gene

No data available for Paralogs for PIR48142 Gene

Variants for PIR48142 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48142 Gene

Disorders for PIR48142 Gene

No disorders were found for PIR48142 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48142 Gene

Publications for PIR48142 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48142 Gene

Sources for PIR48142 Gene

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